June 2010 Archives by date

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Starting: Tue Jun 1 06:40:30 CEST 2010
Ending: Wed Jun 30 22:53:40 CEST 2010
Messages: 541

• [BioC] R: R: why biomaRt cannot extract 3UTR sequences for 1941 ENSGxxxxx ?   mauede at alice.it
• [BioC] finding and deleting repeated observations   Vincent Carey
• [BioC] Tiling array analysis, ACME problem   adam_pgsql
• [BioC] Tiling array analysis, ACME problem   Vincent Carey
• [BioC] AgiMicroRna - FilterMicroRna question   Neel Aluru
• [BioC] Tiling array analysis, ACME problem   Sean Davis
• [BioC] Reg: Error in hopach   Rohit Farmer
• [BioC] Tiling array analysis, ACME problem   adam_pgsql
• [BioC] mclustersim function   Guido Leoni
• [BioC] is database RefSeq achievable from any Bioconductor package   Steve Lianoglou
• [BioC] AgiMicroRna - FilterMicroRna question   James W. MacDonald
• [BioC] AgiMicroRna - FilterMicroRna question   Neel Aluru
• [BioC] mogene10stv1 annotation problem   James W. MacDonald
• [BioC] is database RefSeq achievable from any Bioconductor package   Kasper Daniel Hansen
• [BioC] finding and deleting repeated observations   Ochsner, Scott A
• [BioC] Reading in data with HTqPCR   Heidi Dvinge
• [BioC] AgiMicroRna - FilterMicroRna question   Martin Morgan
• [BioC] AgiMicroRna - FilterMicroRna question   Neel Aluru
• [BioC] hexplom error   Naomi Altman
• [BioC] Building AnnotationDbi Packages - Problems when using makeAnnDbPkg   Marc Carlson
• [BioC] Applying classifiers derived from CMA   Tim Triche
• [BioC] hexplom error   Deepayan Sarkar
• [BioC] phenotypic information of ALLMLL data set   Javier Pérez Florido
• [BioC] AgiMicroRna - FilterMicroRna question   Pedro López Romero
• [BioC] AgiMicroRna - FilterMicroRna question   Neel Aluru
• [BioC] flowQ package: qaProcess.marginevents() function doesn't work   Ewelina Bakala
• [BioC] Difficulty installing oneChannelGUI in Vista   Richard Friedman
• [BioC] Reg: plotting 3d image of pca analysis   Rohit Farmer
• [BioC] Reg: plotting 3d image of pca analysis   Steve Shen
• [BioC] Reg: plotting 3d image of pca analysis   Rohit Farmer
• [BioC] help with lumi and limma   Taylor, Katie
• [BioC] Difficulty installing oneChannelGUI in Vista   James W. MacDonald
• [BioC] Reading in data with HTqPCR   Heidi Dvinge
• [BioC] flowQ package: qaProcess.marginevents() function doesn't work   Nishant Gopalakrishnan
• [BioC] venn diagrams   David Lyon
• [BioC] venn diagrams   Thomas Hampton
• [BioC] Experimental design for RNA-Seq   Jakob Hedegaard
• [BioC] venn diagrams   David Lyon
• [BioC] venn diagrams   Steve Shen
• [BioC] venn diagrams   David Lyon
• [BioC] flowStats warpSet Unpredictable Completion   Aric Gregson
• [BioC] Extract genes for a GO term in GOstat   Rohit Farmer
• [BioC] justPlier default options   Javier Pérez Florido
• [BioC] Help strange GSEA error   Chris Fenton
• [BioC] BayesPeak segfault woes   Tim Rayner
• [BioC] Help strange GSEA error   Sean Davis
• [BioC] BayesPeak segfault woes   Jonathan Cairns
• [BioC] BayesPeak segfault woes   Tim Rayner
• [BioC] Extract genes for a GO term in GOstat   James W. MacDonald
• [BioC] Extract genes for a GO term in GOstat   Steve Lianoglou
• [BioC] plotting 3d image of pca analysis   Frederico Arnoldi
• [BioC] GCRMA Normalization Differences between Windows and MAC   Pierre Gestraud
• [BioC] plotting 3d image of pca analysis   Kevin Coombes
• [BioC] CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010 (IEEE CBMS 2010)   Amandeep Sidhu
• [BioC] Bug in SLqPCR:geomMean?   Michael Muratet
• [BioC] Extract genes for a GO term in GOstat   Chao-Jen Wong
• [BioC] help with lumi and limma   James W. MacDonald
• [BioC] 1000 R tutorials/Links   David Lyon
• [BioC] Extract genes for a GO term in GOstat   Chao-Jen Wong
• [BioC] flowStats warpSet Unpredictable Completion   Chao-Jen Wong
• [BioC] Problem with gcrma   Casper Shyr
• [BioC] flowStats quadrantGate and rangeGate Question   Aric Gregson
• [BioC] flowStats quadrantGate and rangeGate Question   Frederico Arnoldi
• [BioC] flowStats quadrantGate and rangeGate Question   Chao-Jen Wong
• [BioC] rtracklayer mystery with ucscTableQuery   Sigal Blay
• [BioC] duplicatecorrelations   David martin
• [BioC] Curious error with 'subseq' function from BSgenome (IRanges)   J.delasHeras at ed.ac.uk
• [BioC] Curious error with 'subseq' function from BSgenome (IRanges)   Martin Morgan
• [BioC] Two Bioconductor Job Opportunities in Seattle   Martin Morgan
• [BioC] Curious error with 'subseq' function from BSgenome (IRanges)   J.delasHeras at ed.ac.uk
• [BioC] BayesPeak segfault woes   Jonathan Cairns
• [BioC] Problem with gcrma   James W. MacDonald
• [BioC] error message in cvArray command in AgiMicroRna   Richard Friedman
• [BioC] error message in cvArray command in AgiMicroRna   Neel Aluru
• [BioC] Limma -time course - no replicates   Lana Schaffer
• [BioC] rtracklayer mystery with ucscTableQuery   Michael Lawrence
• [BioC] Limma -time course - no replicates   Naomi Altman
• [BioC] rtracklayer mystery with ucscTableQuery   Sigal Blay
• [BioC] phenotypic information of ALLMLL data set   Wolfgang Huber
• [BioC] Reading in data with HTqPCR   deepak roshan
• [BioC] venn diagrams   David Lyon
• [BioC] venn diagrams   Steffen Möller
• [BioC] venn diagrams   David Lyon
• [BioC] venn diagrams   Steffen Möller
• [BioC] venn diagrams   Thomas Girke
• [BioC] venn diagrams   David Lyon
• [BioC] venn diagrams   Steffen Möller
• [BioC] install Rgraphviz   Yuan Jian
• [BioC] Limma -time course - no replicates   Lana Schaffer
• [BioC] Reading in data with HTqPCR   Heidi Dvinge
• [BioC] no array platform for GOstats   Yuan Jian
• [BioC] Limma -time course - no replicates   Steve Lianoglou
• [BioC] Basic Question about gcrma & exporting to excel (command not working)   Jennifer Ehren
• [BioC] writing a fasta file in blocks   Fahim Md
• [BioC] boxplot error with expression set using oligo package and Human gene st 1.0 arrays   jos matejus
• [BioC] Basic Question about gcrma & exporting to excel (command not working)   Benilton Carvalho
• [BioC] boxplot error with expression set using oligo package and Human gene st 1.0 arrays   Benilton Carvalho
• [BioC] Curious error with 'subseq' function from BSgenome (IRanges)   J.delasHeras at ed.ac.uk
• [BioC] Loading workspace blocks generic function dispach   Eric Blanc
• [BioC] duplicate spots   David martin
• [BioC] Basic Question about gcrma & exporting to excel > (command not working)   Dick Beyer
• [BioC] BayesPeak segfault woes   Tim Rayner
• [BioC] no array platform for GOstats   Heidi Dvinge
• [BioC] Publication Quality Table in R   David Lyon
• [BioC] Publication Quality Table in R   Sean Davis
• [BioC] Problem with gcrma   Paul Williams
• [BioC] install Rgraphviz   Cristobal Fresno Rodríguez
• [BioC] Publication Quality Table in R   David Lyon
• [BioC] Publication Quality Table in R   Sean Davis
• [BioC] Publication Quality Table in R   David Lyon
• [BioC] Publication Quality Table in R   Vincent Carey
• [BioC] Publication Quality Table in R   Sean Davis
• [BioC] compound matrix   zjanna
• [BioC] Error Message with RMA normalization in AgiMicroRNA   Richard Friedman
• [BioC] install Rgraphviz   Yuan Jian
• [BioC] Trouble with maQualityPlots   Zoller,Jason R
• [BioC] compound matrix   Steve Lianoglou
• [BioC] writing a fasta file in blocks   Fahim Md
• [BioC] get geneID from given KEGG pathway   Yuan Jian
• [BioC] ProbeID: how to find which one is close to 3 prime end of DNA- help,   Saurin D. Jani
• [BioC] install Rgraphviz   Cristobal Fresno Rodríguez
• [BioC] Error Message with RMA normalization in AgiMicroRNA   James W. MacDonald
• [BioC] install Rgraphviz   Yuan Jian
• [BioC] Trouble with maQualityPlots   James W. MacDonald
• [BioC] Limma -time course - no replicates   Naomi Altman
• [BioC] Publication Quality Table in R   Kevin Coombes
• [BioC] ProbeID: how to find which one is close to 3 prime end of DNA- help,   Kevin Coombes
• [BioC] ProbeID: how to find which one is close to 3 prime end of DNA- help,   Steve Lianoglou
• [BioC] distances for IRanges   Kasper Daniel Hansen
• [BioC] install Rgraphviz   Martin Morgan
• [BioC] ProbeID: how to find which one is close to 3 prime end of DNA- help,   Saurin D. Jani
• [BioC] Limma -time course - no replicates   Lana Schaffer
• [BioC] ProbeID: how to find which one is close to 3 prime end of DNA- help,   Steve Lianoglou
• [BioC] Limma -time course - no replicates   Tan, Yifang
• [BioC] distances for IRanges   Michael Lawrence
• [BioC] Limma -time course - no replicates   Naomi Altman
• [BioC] writing a fasta file in blocks   Sean Davis
• [BioC] get geneID from given KEGG pathway   Marc Carlson
• [BioC] Error Message with RMA normalization in AgiMicroRNA   Richard Friedman
• [BioC] Error Message with RMA normalization in AgiMicroRNA   James W. MacDonald
• [BioC] Error Message with RMA normalization in AgiMicroRNA   Henrik Bengtsson
• [BioC] writing a fasta file in blocks   Kasper Daniel Hansen
• [BioC] distances for IRanges   Kasper Daniel Hansen
• [BioC] writing a fasta file in blocks   Martin Morgan
• [BioC] distances for IRanges   Martin Morgan
• [BioC] distances for IRanges   Kasper Daniel Hansen
• [BioC] distances for IRanges   Michael Lawrence
• [BioC] writing a fasta file in blocks   Fahim Md
• [BioC] Reg: Reading SMD data using ArrayExpress pacakage   Rohit Farmer
• [BioC] writing a fasta file in blocks   mtmorgan at fhcrc.org
• [BioC] Reading SMD data in limma   Rohit Farmer
• [BioC] oneChannelGUI and Affymetrix 1.0 ST arrays   Steve Taylor
• [BioC] Problem with library(SSPA)   Samuel Okoye
• [BioC] oneChannelGUI and Affymetrix 1.0 ST arrays   rcaloger
• [BioC] oneChannelGUI and Affymetrix 1.0 ST arrays   Steve Taylor
• [BioC] oneChannelGUI and Affymetrix 1.0 ST arrays   rcaloger
• [BioC] GEOquery problem   David martin
• [BioC] limma matrix desgin question?   Xiaokuan Wei
• [BioC] GEOquery problem   James W. MacDonald
• [BioC] GEOquery problem   Sean Davis
• [BioC] GEOquery Meta   David Lyon
• [BioC] GEOquery Meta   Sean Davis
• [BioC] oneChannelGUI and Affymetrix 1.0 ST arrays   cstrato
• [BioC] GEOquery Meta   David Lyon
• [BioC] Problem with library(SSPA)   Martin Morgan
• [BioC] Repeat Measurement with Limma Fw: limma matrix desgin question?   Xiaokuan Wei
• [BioC] Bayseq vignette is missing   Naomi Altman
• [BioC] Rgraphviz   Bhaskar Dutta
• [BioC] anybody parsing BioPAX 2?   Emek Demir
• [BioC] Bayseq vignette is missing   Chao-Jen Wong
• [BioC] Reading SMD data in limma   Gordon K Smyth
• [BioC] Repeat Measurement with Limma Fw: limma matrix desgin question?   Mark Cowley
• [BioC] Bayseq vignette is missing   Naomi Altman
• [BioC] Repeat Measurement with Limma Fw: limma matrix desgin question?   Xiaokuan Wei
• [BioC] Repeat Measurement with Limma Fw: limma matrix desgin question?   Mark Cowley
• [BioC] Repeat Measurement with Limma Fw: limma matrix desgin question?   Xiaokuan Wei
• [BioC] Reg: Reading SMD data using ArrayExpress pacakage   Jeremy Gollub
• [BioC] oneChannelGUI and Affymetrix 1.0 ST arrays   rcaloger
• [BioC] Help with genomewidesnp6Crlmm package   emilie sohier
• [BioC] Help with genomewidesnp6Crlmm package   Benilton Carvalho
• [BioC] Help with genomewidesnp6Crlmm package   emilie sohier
• [BioC] Help with genomewidesnp6Crlmm package   Benilton Carvalho
• [BioC] Problem with library(SSPA)   Maarten van Iterson
• [BioC] GEOquery problem   David martin
• [BioC] GEOquery problem   Sean Davis
• [BioC] Cross Platform Array Mapping   David Lyon
• [BioC] Cross Platform Array Mapping   Benjamin Otto
• [BioC] bgx on data without replication   Ernest Turro
• [BioC] Question RE: getEnrichedGo in ChIPpeakAnno package   Noah Dowell
• [BioC] maPalette() and the number of colors returned (bug?)   Ali Tofigh
• [BioC] Question RE: getEnrichedGo in ChIPpeakAnno package   Zhu, Julie
• [BioC] Question RE: getEnrichedGo in ChIPpeakAnno package   Marc Carlson
• [BioC] annotationTools   David Lyon
• [BioC] annotationTools   David Lyon
• [BioC] Rgraphviz crashes for R 2.11.1 on Windows Vista   Tae-Hoon Chung
• [BioC] Rgraphviz   Martin Morgan
• [BioC] TLDA data   deepak roshan
• [BioC] Reading SMD data in limma   Audrey Kauffmann
• [BioC] Rgraphviz   Yong Li
• [BioC] unique values for repeated geneIDs   Hernando Martínez
• [BioC] unique values for repeated geneIDs   Sean Davis
• [BioC] Illumina data and GO2heatmap   Alanne, Mervi
• [BioC] BioC 2010 Conference Update   Martin Morgan
• [BioC] gc-rma and vsn normalization for rat microarray data   Rainer Tischler
• [BioC] 58 ensembl marts in biomart.org   jorge zamora
• [BioC] handling 12 bit tiffs in EBImage   Rajarshi Guha
• [BioC] unique values for repeated geneIDs   Hernando Martínez
• [BioC] unique values for repeated geneIDs   Brad Chapman
• [BioC] biomaRt   David Lyon
• [BioC] handling 12 bit tiffs in EBImage   Gregoire Pau
• [BioC] biomaRt   James W. MacDonald
• [BioC] biomaRt   David Lyon
• [BioC] Interpreting the delta table from SAM   Casper Shyr
• [BioC] biomaRt   Steffen Durinck
• [BioC] biomaRt   David Lyon
• [BioC] Illumina data and GO2heatmap   Marc Carlson
• [BioC] Surrogate variable analysis (SVA) with Limma   steve shen
• [BioC] Interpreting the delta table from SAM   Holger Schwender
• [BioC] gc-rma and vsn normalization for rat microarray data   Benilton Carvalho
• [BioC] Question RE: getEnrichedGo in ChIPpeakAnno package   Noah Dowell
• [BioC] Rgraphviz crashes for R 2.11.1 on Windows Vista   Kasper Daniel Hansen
• [BioC] Tips for the findOverlappingPeaks function in ChIPpeakAnno package   Noah Dowell
• [BioC] Question on makeVennDiagram function in ChIPpeakAnno   Noah Dowell
• [BioC] Question on makeVennDiagram function in ChIPpeakAnno   Zhu, Julie
• [BioC] Question RE: getEnrichedGo in ChIPpeakAnno package   Zhu, Julie
• [BioC] GOstats   Yuan Jian
• [BioC] GEOquery problem   David martin
• [BioC] 58 ensembl marts in biomart.org   jorge zamora
• [BioC] GEOquery problem   Sean Davis
• [BioC] GEOquery problem   David martin
• [BioC] Illumina data and GO2heatmap   Alanne, Mervi
• [BioC] oneChannelGUI and Affymetrix 1.0 ST arrays   Steve Taylor
• [BioC] gc-rma and vsn normalization for rat microarray data   Richard Pearson
• [BioC] oneChannelGUI and Affymetrix 1.0 ST arrays   rcaloger
• [BioC] R memory limit   Hernando Martínez
• [BioC] DESeq and number of replicates required for RNA-Seq   michael watson (IAH-C)
• [BioC] R memory limit   Benilton Carvalho
• [BioC] (no subject)   emilie sohier
• [BioC] R memory limit   Hernando Martínez
• [BioC] R memory limit   Steve Shen
• [BioC] R memory limit   Benilton Carvalho
• [BioC] R memory limit   Kasper Daniel Hansen
• [BioC] R memory limit   Hernando Martínez
• [BioC] GEOquery problem   David martin
• [BioC] GEOquery problem   Sean Davis
• [BioC] Limma and p-adjust: 'global' on non-orthogonal contrasts?   Paolo Innocenti
• [BioC] oneChannelGUI and Affymetrix 1.0 ST arrays   rcaloger
• [BioC] Illumina data and GO2heatmap   Marc Carlson
• [BioC] DESeq and number of replicates required for RNA-Seq   Naomi Altman
• [BioC] DESeq and number of replicates required for RNA-Seq   michael watson (IAH-C)
• [BioC] Question RE: getEnrichedGo in ChIPpeakAnno package   Noah Dowell
• [BioC] affybatch object too big   Noe Andor
• [BioC] affybatch object too big   Noemi Andor
• [BioC] Question RE: getEnrichedGo in ChIPpeakAnno package   Zhu, Julie
• [BioC] AgiMicroRna - FilterMicroRna question   Neel Aluru
• [BioC] affybatch object too big   James W. MacDonald
• [BioC] affybatch object too big   Benilton Carvalho
• [BioC] is there a 1:1 correspondence between ENST and 3'UTR sequence ?   mauede at alice.it
• [BioC] is there a 1:1 correspondence between ENST and 3'UTR sequence ?   Steffen Durinck
• [BioC] is there a 1:1 correspondence between ENST and 3'UTR sequence ?   michael watson (IAH-C)
• [BioC] DESeq and number of replicates required for RNA-Seq   Naomi Altman
• [BioC] DESeq and number of replicates required for RNA-Seq   michael watson (IAH-C)
• [BioC] Problem about using "goProfiles"   wei tie
• [BioC] Using Gostats on a new organism   January Weiner
• [BioC] Using Gostats on a new organism   michael watson (IAH-C)
• [BioC] xps - creating ROOT scheme files   John Coulthard
• [BioC] xps - creating ROOT scheme fi les   Benilton Carvalho
• [BioC] DESeq and number of replicates required for RNA-Seq   Mark Robinson
• [BioC] gc-rma and vsn normalization for rat microarray data   Groot, Philip de
• [BioC] gc-rma and vsn normalization for rat microarray data   Ernest Turro
• [BioC] Using Gostats on a new organism   Heidi Dvinge
• [BioC] xps - creating ROOT scheme files   James W. MacDonald
• [BioC] Using Gostats on a new organism   January Weiner
• [BioC] crlmm and snpMatrix   Tim Rayner
• [BioC] crlmm and snpMatrix   Benilton Carvalho
• [BioC] DESeq and number of replicates required for RNA-Seq   michael watson (IAH-C)
• [BioC] DESeq and number of replicates required for RNA-Seq   Cei Abreu-Goodger
• [BioC] DESeq and number of replicates required for RNA-Seq   michael watson (IAH-C)
• [BioC] xps - creating ROOT scheme files   cstrato
• [BioC] chippeakanno   Zhu, Julie
• [BioC] DESeq and number of replicates required for RNA-Seq   Sean Davis
• [BioC] Using Gostats on a new organism   Marc Carlson
• [BioC] xps - creating ROOT scheme files   cstrato
• [BioC] problem: /usr/local/lib64/R/library/tcltk/libs/tcltk.so: undefined symbol: Tcl_DoOneEvent   Sonia Leach
• [BioC] problem: /usr/local/lib64/R/library/tcltk/libs/tcltk.so: undefined symbol: Tcl_DoOneEvent   Martin Morgan
• [BioC] xps - creating ROOT scheme fi les   Mark Cowley
• [BioC] xps - creating ROOT scheme fi les   Benilton Carvalho
• [BioC] AgiMicroRna - FilterMicroRna question   Pedro López Romero
• [BioC] DESeq and number of replicates required for RNA-Seq   michael watson (IAH-C)
• [BioC] DESeq and number of replicates required for RNA-Seq   Paul Leo
• [BioC] edgeR question tags per million   David martin
• [BioC] AgiMicroRna - FilterMicroRna question   Neel Aluru
• [BioC] edgeR question tags per million   Mark Robinson
• [BioC] Illumina data and GO2heatmap   Alanne, Mervi
• [BioC] DESeq and number of replicates required for RNA-Seq   Naomi Altman
• [BioC] DESeq and number of replicates required for RNA-Seq   Naomi Altman
• [BioC] Agilent CpG islands-Limma   Mohamed Lajnef
• [BioC] AgiMicroRna package error message   Wang, Yonghong (NIH/NCI) [E]
• [BioC] HTqPCR to analyze Fluidigm 96.96 Dynamic Array data   V. Oostra
• [BioC] Error message with rmaMicroRna on mouse data in AgiMicroRNA   Richard Friedman
• [BioC] DAVIDQuery   Day, Roger S
• [BioC] Is there any function to read genbank flat files.   Fahim Md
• [BioC] Error message with rmaMicroRna on mouse data in AgiMicroRNA POSSIBLY FOUND PROBLEM   Richard Friedman
• [BioC] question about limma   Taylor, Katie
• [BioC] Illumina data and GO2heatmap   Marc Carlson
• [BioC] TLDA data   Heidi Dvinge
• [BioC] Using multiclass in SAMr   Casper Shyr
• [BioC] AgiMicroRNA and Extra columns in Agilent Mouse miRNA Microarray Release 12.0 G4471A-021828.   Richard Friedman
• [BioC] question about limma   Richard Friedman
• [BioC] AgiMicroRNA and Extra columns in Agilent Mouse miRNA Microarray Release 12.0 G4471A-021828.   Neel Aluru
• [BioC] AgiMicroRNA and Extra columns in Agilent Mouse miRNA Microarray Release 12.0 G4471A-021828.   Richard Friedman
• [BioC] question about limma   michael watson (IAH-C)
• [BioC] HTqPCR to analyze Fluidigm 96.96 Dynamic Array data   Heidi Dvinge
• [BioC] HTqPCR to analyze Fluidigm 96.96 Dynamic Array data   Heidi Dvinge
• [BioC] RLE Nose t2   Noemi Andor
• [BioC] DNA-Methylation, CopyNumber Results   Noemi Andor
• [BioC] question about limma   Mark Cowley
• [BioC] Questions about calculate gene signal   Yang Lv
• [BioC] targetscan   Yuan Jian
• [BioC] Agilent CpG islands-Limma   Prashantha Hebbar
• [BioC] scanBam error with bamViews   Paul Leo
• [BioC] xps - creating ROOT scheme fi les   John Coulthard
• [BioC] edgeR question tags per million   David martin
• [BioC] Error message with rmaMicroRna on mouse data in AgiMicroRNA   Pedro López Romero
• [BioC] AgiMicroRNA and Extra columns in Agilent Mouse miRNA Microarray Release 12.0 G4471A-021828.   Pedro López Romero
• [BioC] Questions about calculate gene signal   Wolfgang Huber
• [BioC] (no subject)   Wolfgang Huber
• [BioC] AgiMicroRNA and Extra columns in Agilent Mouse miRNA Microarray Release 12.0 G4471A-021828.   Neel Aluru
• [BioC] edgeR: a question about library size   rcaloger
• [BioC] edgeR: a question about library size   Mark Robinson
• [BioC] AgiMicroRNA and Extra columns in Agilent Mouse miRNA Microarray Release 12.0 G4471A-021828.   Pedro López Romero
• [BioC] distances for IRanges   Michael Lawrence
• [BioC] RLE Nose t2   James W. MacDonald
• [BioC] Questions about calculate gene signal   Richard Friedman
• [BioC] Error message with rmaMicroRna on mouse data in AgiMicroRNA   Richard Friedman
• [BioC] error in installing girafe package   Andreia Fonseca
• [BioC] error in installing girafe package   Steve Lianoglou
• [BioC] Biostrings_2.16.5 / IRanges_1.7.1 :: Broken(?)   Steve Lianoglou
• [BioC] Biostrings_2.16.5 / IRanges_1.7.1 :: Broken(?) -- DISREGARD   Steve Lianoglou
• [BioC] DNA-Methylation, CopyNumber Results   Chao-Jen Wong
• [BioC] Error Message upon filtering in AgiMicroRNA of RMA normalized object.   Richard Friedman
• [BioC] mvaPlots of RMA normalized data in AgiMicroRNA   Richard Friedman
• [BioC] Error in cvArray in AgiMicroRNA   Richard Friedman
• [BioC] DNA-Methylation, CopyNumber Results   Sean Davis
• [BioC] RLE Nose t2   noemi
• [BioC] What has bioinformatics ever done for us?   Anthony Goldbloom | Kaggle
• [BioC] Agilent CpG islands-Limma   Prashantha Hebbar
• [BioC] Illumina data and GO2heatmap   Lavinia Gordon
• [BioC] Error message with rmaMicroRna on mouse data in AgiMicroRNA   Pedro López Romero
• [BioC] question on makeTranscriptDbFromUCSC   Hervé Pagès
• [BioC] AgiMicroRNA and Extra columns in Agilent Mouse miRNA Microarray Release 12.0 G4471A-021828.   Pedro López Romero
• [BioC] error in installing girafe package   Andreia Fonseca
• [BioC] Protein microarray analysis using Bioconductor   Javier Pérez Florido
• [BioC] Protein microarray analysis using Bioconductor   Wolfgang Huber
• [BioC] xps and unifilter; Error: UnitID not found; error in function ‘ExportData’   John Coulthard
• [BioC] scanBam error with bamViews   Martin Morgan
• [BioC] targetscan   James F. Reid
• [BioC] Reading SMD data in limma   Budhayash Gautam
• [BioC] HTqPCR to analyze Fluidigm 96.96 Dynamic Array data   V. Oostra
• [BioC] AgiMicroRNA and Extra columns in Agilent Mouse miRNA Microarray Release 12.0 G4471A-021828.   Neel Aluru
• [BioC] crlmm package help for copy number affymetrix snp 6.0   emilie sohier
• [BioC] crlmm package help for copy number affymetrix snp 6.0   Benilton Carvalho
• [BioC] crlmm package help for copy number affymetrix snp 6.0   emilie sohier
• [BioC] AgiMicroRna package error message   Wang, Yonghong (NIH/NCI) [E]
• [BioC] crlmm package help for copy number affymetrix snp 6.0   Benilton Carvalho
• [BioC] crlmm package help for copy number affymetrix snp 6.0   emilie sohier
• [BioC] different color for a subset of points on heatmap   marek piatek (BI)
• [BioC] crlmm package help for copy number affymetrix snp 6.0   Benilton Carvalho
• [BioC] expression profile   anupam sinha
• [BioC] question on makeTranscriptDbFromUCSC   Ping Ma
• [BioC] expression profile   James W. MacDonald
• [BioC] xps and unifilter; Error: UnitID not found; error in function ‘ExportData’   cstrato
• [BioC] different color for a subset of points on heatmap   Francois Pepin
• [BioC] limma Agilent Normalization   Noemi Andor
• [BioC] xps and unifilter; Error: UnitID not found; error in function ‘ExportData’   John Coulthard
• [BioC] edgeR: a question about library size   Naomi Altman
• [BioC] edgeR: a question about library size   Mark Robinson
• [BioC] xps and unifilter; Error: UnitID not found; error in function ‘ExportData’   cstrato
• [BioC] Reading SMD data in limma   Gordon K Smyth
• [BioC] different color for a subset of points on heatmap   marek piatek (BI)
• [BioC] different color for a subset of points on heatmap   Anthony Ferrari
• [BioC] AgiMicroRNA and Extra columns in Agilent Mouse miRNA Microarray Release 12.0 G4471A-021828.   Pedro López Romero
• [BioC] different color for a subset of points on heatmap   Sean Davis
• [BioC] different color for a subset of points on heatmap   Kevin Coombes
• [BioC] selection of dif.exp.genes defining FDR in SAM   Hernando Martínez
• [BioC] AgiMicroRNA and Extra columns in Agilent Mouse miRNA Microarray Release 12.0 G4471A-021828.   Neel Aluru
• [BioC] error in nbinomTest from package DESeq   Andreia Fonseca
• [BioC] limma Agilent Normalization   Sean Davis
• [BioC] selection of dif.exp.genes defining FDR in SAM   Holger Schwender
• [BioC] blast   array chip
• [BioC] different color for a subset of points on heatmap   David Schruth
• [BioC] different color for a subset of points on heatmap   michael watson (IAH-C)
• [BioC] proposed: a bridge between R and Cytoscape   Paul Shannon
• [BioC] hyperGTest(paramsGO)   Yuan Jian
• [BioC] common genes in different platforms   Hernando Martínez
• [BioC] edgeR   David martin
• [BioC] different color for a subset of points on heatmap   marek piatek (BI)
• [BioC] biomaRt connection problems   michael watson (IAH-C)
• [BioC] biomaRt connection problems   James W. MacDonald
• [BioC] biomaRt connection problems   Sean Davis
• [BioC] biomaRt connection problems   michael watson (IAH-C)
• [BioC] identical output plots for NUSE AND RLE   Richard Friedman
• [BioC] biomaRt connection problems   marek piatek (BI)
• [BioC] identical output plots for NUSE AND RLE   Ben Bolstad
• [BioC] identical output plots for NUSE AND RLE   Paolo Innocenti
• [BioC] identical output plots for NUSE AND RLE   Richard Friedman
• [BioC] A bridge between Cytoscape and R   Perry_D_Haaland at bd.com
• [BioC] A bridge between Cytoscape and R   Perry_D_Haaland at bd.com
• [BioC] proposed: a bridge between R and Cytoscape   Steve Lianoglou
• [BioC] proposed: a bridge between R and Cytoscape   Cristobal Fresno Rodríguez
• [BioC] hyperGTest(paramsGO)   James W. MacDonald
• [BioC] hyperGTest(paramsGO)   Chao-Jen Wong
• [BioC] MAS5.0 and dChip syntax using expresso()   array chip
• [BioC] logFC in edgeR   Davis McCarthy
• [BioC] MAS5.0 and dChip syntax using expresso()   Moshe Olshansky
• [BioC] arrayQualityMetrics problem with Agilent 2-colour   Edwin Groot
• [BioC] limma, contrasts and affymetrix query   Iain Gallagher
• [BioC] limma, contrasts and affymetrix query   James W. MacDonald
• [BioC] arrayQualityMetrics problem with Agilent 2-colour   Audrey Kauffmann
• [BioC] Regarding ScISI   anupam sinha
• [BioC] Regarding ScISI   Marc Carlson
• [BioC] flowStats quadrantGate and rangeGate Question   Chao-Jen Wong
• [BioC] flowStats: lymphGate Issue, plotting the results?   Chao-Jen Wong
• [BioC] xps and unifilter; Error: UnitID not found; error in function ‘ExportData’   cstrato
• [BioC] methylumi   Noemi Andor
• [BioC] methylumi   Sean Davis
• [BioC] get BP GOterm from geneID   Yuan Jian
• [BioC] Regarding ScISI   anupam sinha
• [BioC] Reading Illumina IDAT files   Mark Cowley
• [BioC] Reading Illumina IDAT files   Matthew Ritchie
• [BioC] methylumi   Sean Davis
• [BioC] package RMySQL   l.mohammadikhankahdani
• [BioC] Biostrings - size limits   Erik Wright
• [BioC] error in function reduce from girafe   Andreia Fonseca
• [BioC] package RMySQL   James W. MacDonald
• [BioC] error in function reduce from girafe   Joern Toedling
• [BioC] arrayQualityMetrics problem with Agilent 2-colour   Edwin Groot
• [BioC] Biostrings - size limits   Steve Lianoglou
• [BioC] methylumi   Sean Davis
• [BioC] Problem with chromLoc object.   Sathe, Tejas
• [BioC] flowcore   David Lyon
• [BioC] biomaRt: error using dataset from HapMap_rel27 mart   Brad McNeney
• [BioC] biomaRt: error using dataset from HapMap_rel27 mart   Steffen Durinck
• [BioC] How to cluster genes based on their GO term in Arabidopsis?   Xiaohui Wu
• [BioC] limma matrix design for biological replicates.   neeraj
• [BioC] Bioinformatic Core Facility wiki at SIB   Francesco Mancuso
• [BioC] Problem with chromLoc object.   Furge, Kyle
• [BioC] error in function reduce from girafe   Joern Toedling
• [BioC] How to cluster genes based on their GO term in Arabidopsis?   James W. MacDonald
• [BioC] flowcore   Perry_D_Haaland at bd.com
• [BioC] Heatmap.2 scale problems: Sacling inside the function gives different results than scaling outside!!!   Elmer Fernández
• [BioC] ChIPpeakAnno Paper - Example Dataset not found   Zhu, Julie
• [BioC] error in function reduce from girafe   Andreia Fonseca
• [BioC] arrayQualityMetrics problem with Agilent 2-colour   Audrey Kauffmann
• [BioC] edgeR question   王喆
• [BioC] Adding metadata to FCS files   Josef Spidlen
• [BioC] Querying/manipulating JASPAR data   Steve Lianoglou
• [BioC] dispersion in edgeR   Naomi Altman
• [BioC] Querying/manipulating JASPAR data   Thomas Girke
• [BioC] Querying/manipulating JASPAR data   Raphael Gottardo
• [BioC] edgeR question   Naomi Altman
• [BioC] How to make my own GO.db?   Xiaohui Wu
• [BioC] How to make my own GO.db?   Marc Carlson
• [BioC] How to make my own GO.db?   Marc Carlson
• [BioC] dispersion in edgeR   Gordon K Smyth
• [BioC] limma matrix design for biological replicates.   Gordon K Smyth
• [BioC] edgeR question   Gordon K Smyth
• [BioC] edgeR question   Naomi Altman
• [BioC] edgeR and FDR   Gordon K Smyth
• [BioC] edgeR and FDR   Naomi Altman
• [BioC] HTqPCR to analyze Fluidigm 96.96 Dynamic Array data   Heidi Dvinge
• [BioC] edgeR and FDR   Gordon K Smyth
• [BioC] edgeR normalization factors   王喆
• [BioC] edgeR and FDR   Gordon K Smyth
• [BioC] TR: HTqPCR package using the Biomark Fluidigm 96.96 array   Heidi Dvinge
• [BioC] xps and unifilter; Error: UnitID not found; error in function ‘ExportData’   John Coulthard
• [BioC] Affymetrix HG U295 support in BioC?   Sole Acha, Xavi
• [BioC] R package modreg   Arunava Chakravartty
• [BioC] Which package for gene expression correlation analysis   Yuan Hao
• [BioC] R package modreg   Joern Toedling
• [BioC] Which package for gene expression correlation analysis   Steve Lianoglou
• [BioC] Affymetrix HG U295 support in BioC?   James W. MacDonald
• [BioC] get table with aanotaed genome features   Andreia Fonseca
• [BioC] Affymetrix HG U295 support in BioC?   Sole Acha, Xavi
• [BioC] flowQ : qaProcess.* functions errors   Ewelina Bakala
• [BioC] Affymetrix HG U295 support in BioC?   James W. MacDonald
• [BioC] Affymetrix HG U295 support in BioC?   cstrato
• [BioC] xps and unifilter; Error: UnitID not found; error in function ‘ExportData’   cstrato
• [BioC] Affymetrix HG U295 support in BioC?   Sole Acha, Xavi
• [BioC] Agi4x44 PreProcessing for GSE11682 Data Set   Sathe, Tejas
• [BioC] Affymetrix HG U295 support in BioC?   cstrato
• [BioC] subset GEO data by platform   Jeremiah H. Savage
• [BioC] methylumi normalization   Noe Andor
• [BioC] dynamic library() calls   Jeremiah H. Savage
• [BioC] dynamic library() calls   Jeremiah H. Savage
• [BioC] Which package for gene expression correlation analysis   Naomi Altman
• [BioC] edgeR normalization factors   Naomi Altman
• [BioC] subset GEO data by platform   Jeremiah H. Savage
• [BioC] mouse transcriptome   rna seq
• [BioC] subset GEO data by platform   Sean Davis
• [BioC] mouse transcriptome   Heidi Dvinge
• [BioC] methylumiSet - normalization   Noemi Andor
• [BioC] download error with some packages(windows)   Arcor
• [BioC] edgeR normalization factors   Mark Robinson
• [BioC] get table with aanotaed genome features   Joern Toedling
• [BioC] Affymetrix HG U295 support in BioC?   Sole Acha, Xavi
• [BioC] mouse transcriptome   rna seq
• [BioC] edgeR normalization factors   王喆
• [BioC] mouse transcriptome   Steve Lianoglou
• [BioC] edgeR normalization factors   Naomi Altman
• [BioC] edgeR normalization factors   Naomi Altman
• [BioC] edgeR normalization factors   Wolfgang Huber
• [BioC] Which package for gene expression correlation analysis   Wolfgang Huber
• [BioC] common genes in different platforms   Wolfgang Huber
• [BioC] Affymetrix HG U295 support in BioC?   cstrato
• [BioC] Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db'; RS-DBI driver -database locked   Manikhandan V A
• [BioC] error in nbinomTest from package DESeq   Wolfgang Huber
• [BioC] Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db'; RS-DBI driver -database locked   Marc Carlson
• [BioC] Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db'; RS-DBI driver -database locked   Manikhandan Mudaliar
• [BioC] edgeR normalization factors   王喆
• [BioC] Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db'; RS-DBI driver -database locked   Marc Carlson
• [BioC] Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db'; RS-DBI driver -database locked   Manikhandan Mudaliar
• [BioC] Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db'; RS-DBI driver -database locked   Hervé Pagès
• [BioC] string to function argument   Jeremiah H. Savage
• [BioC] string to function argument   Jeremiah H. Savage
• [BioC] string to function argument   Sean Davis
• [BioC] string to function argument   Jeremiah H. Savage
• [BioC] string to function argument   Jeremiah H. Savage
• [BioC] edgeR normalization factors   Simon Anders
• [BioC] string to function argument   Sean Davis
• [BioC] Pthread-Problems when compiling Bioconductor with icc   Thomas Unterthiner
• [BioC] issues with xps filter   Larry N. Singh
• [BioC] string to function argument   Jeremiah H. Savage
• [BioC] string to function argument   Sean Davis
• [BioC] bioconductor on rocks cluster   Bryan Hepworth
• [BioC] VSN package: vsnrma generate different values from the same data   Xiaokuan Wei
• [BioC] AgiMicroRNA and Extra columns in Agilent Mouse miRNA Microarray Release 12.0 G4471A-021828.   Richard Friedman
• [BioC] bioconductor on rocks cluster   David Schruth
• [BioC] AgiMicroRNA and Extra columns in Agilent Mouse miRNA Microarray Release 12.0 G4471A-021828.   Richard Friedman
• [BioC] issues with xps filter   cstrato
• [BioC] P>1 (edgeR and sage.test)   Naomi Altman

Last message date: Wed Jun 30 22:53:40 CEST 2010
Archived on: Wed Jun 30 22:54:00 CEST 2010

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