[BioC] xps - creating ROOT scheme fi les

[cstrato]

Dear John,

As Jim has already kindly mentioned, you can download all relevant files 
from the Affymetrix web-site, see also:
https://www.stat.math.ethz.ch/pipermail/bioconductor/2010-March/032120.html

Moreover, thanks to Steve Shen you can now also download pre-built 
scheme files from:
http://microarray.bu.edu/~sshen/xps/
see also:
https://www.stat.math.ethz.ch/pipermail/bioconductor/2010-May/033601.html

Best regards
Christian
_._._._._._._._._._._._._._._._._._
C.h.r.i.s.t.i.a.n   S.t.r.a.t.o.w.a
V.i.e.n.n.a           A.u.s.t.r.i.a
e.m.a.i.l:        cstrato at aon.at
_._._._._._._._._._._._._._._._._._


On 6/15/10 12:43 PM, John Coulthard wrote:
>
> Dear list
>
> I've got 6x2 Human Exon 1.0 ST arrays to analyse and 3gB of ram so I believe I need to use xps.
> The xps vignette, appendix A.1. says...
> "we need to create ROOT scheme files directly from the Aymetrix source files, which need to be downloaded
> first from the Aymetrix web site."
>
> I think the web page I need to download from is...
> http://www.affymetrix.com/browse/products.jsp?productId=131452&navMode=34000&navAction=jump&aId=productsNav#1_3
>
> but there is no file that ends with ‘annot.csv’.  Should I rename one of the other annotation files? Which one?
>
> The CDF file on this page says 'unsupported' so maybe I should be looking for CLF-, PGF-files, but they're not on this page either.
>
> Can anyone help me out with what to download from where?
>
> Thanks
> John
>
>
>   		 	   		
> _________________________________________________________________
> Hotmail: Powerful Free email with security by Microsoft.
>
> 	[[alternative HTML version deleted]]
>
>
>
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor