[BioC] 58 ensembl marts in biomart.org

[jorge zamora]

Hello,

I forgot to mention the main changes for 58 Ensembl Marts. 

There is no data for Turkey. There are two new assemblies, Marmoset and
C. elegans. Drop down lists for the different filters in marts have been
updated (see below for more detailed information of particular
changes). 

ENSEMBL GENES 58:
* Filters:
- added 'lincRNA' option in GENE, Gene type. -for human-

* Attributes:   
- added 'Event Type' in Transcript Event, TRANSCRIPT EVENT, Splicing
Event
- removed 'Consequence Type' in Variations, GENE ASSOCIATED VARIATIONS,
Gene Location and effect -this attribute will be back on 59-
- added 'HAMAP Protein Annotation' set of attributes in Features. -for
C. elegans-

ENSEMBL VARIATION 58 
* Filters:
- added 'with HGMD ID(s)' option in GENERAL VARIATION FILTERS, Variation
source. 

* Attibutes:
- added 'Variation start in CDS (bp)' and 'Variation end in CDS (bp)' in
Variation, GENE ASSOCIATED INFORMATION.
- added 'Population Genetics' set of attributes in Variation, SEQUENCE
VARIATION, Sequence Variation. 
- added 'HGMD ID' option in Variation, SEQUENCE VARIATION, Variation
Source. 
- added 'Bound start (bp)' and 'Bound end (bp)' in STRUCTURAL VARIATION,
Structural Variation Information.

ENSEMBL FUNCTIONAL GENOMICS 58
* Filters:
- added 'Cell Type' in REGULATORY FEATURES -for human and mouse-
 
* Attributes:
- added 'Cell Type' in REGULATORY FEATURES -for human and mouse-



Regards,
Jorge.










On Fri, 2010-06-11 at 17:06 +0100, jorge zamora wrote:
> Hello,
> 
> This is to inform you that biomart.org is already displaying 58 Ensembl
> Marts:
> 
> - Ensembl Genes 58
> - Ensembl Variation 58
> - Ensembl Functional Genomics 58
> - Vega 38
> 
> Regards,
> Jorge.
> 
>