[BioC] MAS5.0 and dChip syntax using expresso()
Moshe Olshansky
m_olshansky at yahoo.com
Wed Jun 23 04:50:26 CEST 2010
Hi John,
You can use mas5 instead.
Alternatively, by entering mas5 you will see the code for it (including the appropriate call to expresso).
Regards,
Moshe.
--- On Wed, 23/6/10, array chip <arrayprofile at yahoo.com> wrote:
> From: array chip <arrayprofile at yahoo.com>
> Subject: [BioC] MAS5.0 and dChip syntax using expresso()
> To: bioconductor at stat.math.ethz.ch
> Received: Wednesday, 23 June, 2010, 9:51 AM
> Hi,
>
> I figured out how to compute RMA expression measure using
> expresso():
>
> eset<-expresso(Dilution, bgcorrect.method="rma",
> normalize.method="quantiles", pmcorrect.method="pmonly",
> summary.method="medianpolish")
>
> But, how do I compute MAS5.0 and dChip expression measure
> using expresso()? The help page of expresso() doesn't show
> all the available options for arguments bgcorrect.method,
> normalize.method, pmcorrect.method and summary.method.
>
> And where can I find all the available options for these
> argument?
>
> Thank you,
>
> John
>
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