[BioC] Using Gostats on a new organism

[January Weiner]

Many thanks to you both -- although I cannot directly use Biomart,
both topGO and GOStats seem to be a viable alternative.

Best regards,

j.

On Tue, Jun 15, 2010 at 12:31 PM, michael watson (IAH-C)
<michael.watson at bbsrc.ac.uk> wrote:
> Hi
>
> This may not help you with GOstats, but we have example code on our website on how to use topGO:
>
> http://bioinformatics.iah.ac.uk/sample-code
>
> Thanks
> Mick
> ________________________________________
> From: bioconductor-bounces at stat.math.ethz.ch [bioconductor-bounces at stat.math.ethz.ch] On Behalf Of January Weiner [january.weiner at mpiib-berlin.mpg.de]
> Sent: 15 June 2010 11:19
> To: BioC
> Subject: [BioC] Using Gostats on a new organism
>
> Dear all,
>
> I am fighting with the GOStats vignettes and the corresponding
> chapters from the Springer books, and I'm lost.
>
> I have a genome (and corresponding arrays) of an organism, along with
> GO assignments. I'd like to run an enrichment analysis. GOStats seems
> to need the db packages, is that correct? Is there another way of
> running it?
>
> I would be grateful for any links or hints for further reading.
>
> Best regards,
>
> January
>
> P.S. I'd like to thank here for all who have helped me before; I don't
> want to clutter the discussions with countless "thank you" e-mails :-)
>
> --
> -------- Dr. January Weiner 3 --------------------------------------
> Max Planck Institute for Infection Biology
> Charitéplatz 1
> D-10117 Berlin, Germany
> Web   : www.mpiib-berlin.mpg.de
> Tel     : +49-30-28460514
>
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-- 
-------- Dr. January Weiner 3 --------------------------------------
Max Planck Institute for Infection Biology
Charitéplatz 1
D-10117 Berlin, Germany
Web   : www.mpiib-berlin.mpg.de
Tel     : +49-30-28460514