[BioC] Difficulty installing oneChannelGUI in Vista

[Richard Friedman]

Dear List,



	I am having difficulty installing oneChannelGUI ion a PC in Vista.

Upon attempting to load oneChannelGUI from the pull-down menu I get  
the following response

culminating in an error message:

#######################################



Loading required package: affylmGUI

Loading required package: limma
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: affy
Loading required package: affyio

ActiveTcl was found in the Windows Registry (for CURRENT_USER),  
installed in
C:\Tcl
This directory will be added to the Tcl search path to enable affylmGUI
to find the Tktable and BWidget extensions.

To begin, type affylmGUI() or use the pull-down menu.

Searching for user-defined affylmGUI commands in C:/Users/Michael/ 
Documents/R/win-library/2.10/affylmGUI/etc ...
Loading required package: tkWidgets
Loading required package: widgetTools
Loading required package: DynDoc
Loading required package: tools
Loading required package: GOstats
Loading required package: Category
Loading required package: AnnotationDbi
Loading required package: graph
Loading required package: DBI
Error in checkDBSCHEMA(dbconn, "GO_DB") :
   invalid DB schema version (found 2.1, expected 2.0)
Error : .onLoad failed in 'loadNamespace' for 'GO.db'
Error: package 'GOstats' could not be loaded

#######################################

Here are the details of my session:


 > sessionInfo()
R version 2.10.1 (2009-12-14)
i386-pc-mingw32

locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages:
[1] tools     tcltk     stats     graphics  grDevices utils     datasets
[8] methods   base

other attached packages:
  [1] RSQLite_0.9-0       DBI_0.2-5           graph_1.26.0
  [4] Category_2.12.1     AnnotationDbi_1.8.2 tkWidgets_1.24.0
  [7] DynDoc_1.24.0       widgetTools_1.24.0  affylmGUI_1.20.0
[10] affyio_1.14.0       affy_1.24.2         limma_3.2.3
[13] Biobase_2.6.1

loaded via a namespace (and not attached):
[1] annotate_1.24.1      genefilter_1.28.2    GSEABase_1.8.0
[4] preprocessCore_1.8.0 RBGL_1.24.0          splines_2.10.1
[7] survival_2.35-7      XML_3.1-0            xtable_1.5-6
 >

#######################################

I would appreciate any advice you might offer.

Thanks and best wishes,

Rich

------------------------------------------------------------

Richard A. Friedman, PhD
Associate Research Scientist,
Biomedical Informatics Shared Resource
Herbert Irving Comprehensive Cancer Center (HICCC)
Lecturer,
Department of Biomedical Informatics (DBMI)
Educational Coordinator,
Center for Computational Biology and Bioinformatics (C2B2)/
National Center for Multiscale Analysis of Genomic Networks (MAGNet)
Room 824
Irving Cancer Research Center
Columbia University
1130 St. Nicholas Ave
New York, NY 10032
(212)851-4765 (voice)
friedman at cancercenter.columbia.edu
http://cancercenter.columbia.edu/~friedman/

In Memoriam,
Philip Klass