[BioC] flowQ package: qaProcess.marginevents() function doesn't work
Ewelina Bakala
ewelina at pasteur.edu.uy
Wed Jun 2 16:33:50 CEST 2010
hallo everybody,
I have a problem with qaProcess.marginevents() function from flowQ package
I'm following the example
> library(flowQ)
> data(GvHD)
> dest<- tempdir()
> qp<- qaProcess.marginevents(GvHD, channels=c("FSC-H", "SSC-H"),
outdir=dest)
that I got trying
> ?qaProcess.marginevents
but the command
> qp<- qaProcess.marginevents(GvHD, channels=c("FSC-H", "SSC-H"),
outdir=dest)
follows to the error message:
computing margin events...Error: no se pudo encontrar la función "boundaryFilter"
Error en filter(set, boundaryFilter(x, side = side)) :
error in evaluating the argument 'filter' in selecting a method for function 'filter'
and I have no idea how to deal with this error.I will be very thankful if you could help me to solve this problem.
Best wishes,
Ewelina Bakala
> sessionInfo()
R version 2.10.0 (2009-10-26)
i686-pc-linux-gnu
locale:
[1] LC_CTYPE=es_ES.UTF-8 LC_NUMERIC=C
[3] LC_TIME=es_ES.UTF-8 LC_COLLATE=es_ES.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=es_ES.UTF-8
[7] LC_PAPER=es_ES.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=es_ES.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] tools tcltk stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] flowQ_1.6.0 latticeExtra_0.6-4 RColorBrewer_1.0-2 parody_1.4.0
[5] bioDist_1.18.0 mvoutlier_1.4 flowViz_1.10.0 flowCore_1.8.3
[9] Biobase_2.6.0 feature_1.2.4 ks_1.6.8 rpanel_1.0-5
[13] KernSmooth_2.23-3 rrcov_1.0-00 pcaPP_1.7 mvtnorm_0.9-8
[17] robustbase_0.4-5 lattice_0.17-26 outliers_0.13-2
loaded via a namespace (and not attached):
[1] annotate_1.24.0 AnnotationDbi_1.8.0 DBI_0.2-4
[4] geneplotter_1.24.0 graph_1.24.0 grid_2.10.0
[7] MASS_7.3-3 RSQLite_0.7-3 stats4_2.10.0
[10] xtable_1.5-5
>
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