[BioC] string to function argument
Jeremiah H. Savage
jeremiahsavage at gmail.com
Wed Jun 30 01:44:09 CEST 2010
Hello,
I would like to get the Table information out of multiple GPLList objects.
How can I use a string/char variable as a function argument?
In this case the function is GEOquery::Table()
geodata <- parseGEO("GSExxxx.soft")
gpldata <- GPLList(geodata)[1]
gplname <- names(gpldata) # eg. "GPL96"
gplaccess <- paste(gpldata,gplname,sep="$")
ENTREZ_GENE_ID <- Table(gplaccess)$ENTREZ_GENE_ID
###^^^ the above line does NOT work ,but
ENTREZ_GENE_ID <-Table(gpldata$GPL96)$ENTREZ_GENE_ID
###^^^ the above line DOES work
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