[BioC] Help with genomewidesnp6Crlmm package

Benilton Carvalho beniltoncarvalho at gmail.com
Thu Jun 10 11:20:43 CEST 2010


library(pd.genomewidesnp.6)
conn = db(pd.genomewidesnp.6)
info = dbGetQuery(conn, "SELECT man_fsetid, dbsnp_rs_id, gene_assoc
FROM featureSet")

cheers
b

On 10 June 2010 09:58, emilie sohier <emilie.sohier15 at orange.fr> wrote:
> Thanks for your answer.
>
> My problem is to find the correspondence between snpID and the gene where is this snp.
>
>
>> Message du 10/06/10 10:40
>> De : "Benilton Carvalho"
>> A : "emilie sohier"
>> Copie à : bioconductor at stat.math.ethz.ch
>> Objet : Re: [BioC] Help with genomewidesnp6Crlmm package
>>
>>
>> It'd be very helpful if you could describe what is it that you're
>> trying to achieve.
>>
>> This annotation package (genomewidesnp6Crlmm) is for internal use of
>> the crlmm package.
>>
>> I'm tempted to say that the information you're looking for may be in
>> the pd.genomewidesnp.6 package.
>>
>> b
>>
>> On 10 June 2010 09:14, emilie sohier  wrote:
>> > Hello,my name is Emilie and i'am a bioinformatics student.
>> >
>> > I want to access to the data in the annotation package genomewidesnp6Crlmm but i don't know the method to do that and i don't find information about that.
>> >
>> > Please,could you help me?
>> > Thanks in advance
>> >
>> > Emilie
>> >
>> > _______________________________________________
>> > Bioconductor mailing list
>> > Bioconductor at stat.math.ethz.ch
>> > https://stat.ethz.ch/mailman/listinfo/bioconductor
>> > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
>> >
>>
>>
>
>
>



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