[BioC] Bug in SLqPCR:geomMean?

[Michael Muratet]

Greetings

I've been using SLqPCR on data that contains some NA values and have  
discovered what I think is a bug in the geomMean method.

   if(any(x < 0))
     stop("'x' contains negative value(s)")
   if(na.rm) x <- x[!is.na(x)]

should be

   if(na.rm) x <- x[!is.na(x)]
   if(any(x < 0))
     stop("'x' contains negative value(s)")

or the any() method fails because the result is not TRUE/FALSE.

Best Regards,

Mike

Michael Muratet, Ph.D.
Senior Scientist
HudsonAlpha Institute for Biotechnology
mmuratet at hudsonalpha.org
(256) 327-0473 (p)
(256) 327-0966 (f)

Room 4005
601 Genome Way
Huntsville, Alabama 35806