December 2010 Archives by thread

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Starting: Wed Dec 1 02:26:44 CET 2010
Ending: Fri Dec 31 22:22:27 CET 2010
Messages: 509

• [BioC] Calculating average expression value in limma topTable output   Sunny Srivastava
• [BioC] Limma - avereps - problems with NA   Gordon K Smyth
• [BioC] Nimblegen Arrays and Ringo   Dario Strbenac
  • [BioC] Nimblegen Arrays and Ringo   Laurent Gautier
    • [BioC] Nimblegen Arrays and Ringo   Todd Richmond
• [BioC] Localizing repetitive regions on a chromosome   rcaloger
  • [BioC] Localizing repetitive regions on a chromosome   Michael Lawrence
• [BioC] Error coerce in AffyQCReport   Lorenzo Melchor
  • [BioC] Error coerce in AffyQCReport   Sean Davis
    • [BioC] Error coerce in AffyQCReport   Lorenzo Melchor
      • [BioC] Error coerce in AffyQCReport   Sean Davis
      • [BioC] Error coerce in AffyQCReport   Lorenzo Melchor
      • [BioC] Error coerce in AffyQCReport   Martin Morgan
      • [BioC] Error coerce in AffyQCReport   Iain Gallagher
      • [BioC] Error coerce in AffyQCReport   Alexander Yu
• [BioC] GEOquery   Koray Kaya
  • [BioC] GEOquery   Sean Davis
• [BioC] Searching for packages for normalizing Metabolomic data   nqueralt at clinic.ub.es
  • [BioC] Searching for packages for normalizing Metabolomic data   Laurent Gatto
    • [BioC] Searching for packages for normalizing Metabolomic data   Martin Morgan
• [BioC] Limma: design for a multiple level factor taking into account centre and plate   Daniel Brewer
• [BioC] EBImage installs but won't load on Mac OS 10.6.4   W. A. Green
• [BioC] org.*.eg.db problem   arne.mueller at novartis.com
  • [BioC] org.*.eg.db problem   Martin Morgan
    • [BioC] org.*.eg.db problem   Laurent Gautier
      • [BioC] org.*.eg.db problem   Iain Gallagher
      • [BioC] org.*.eg.db problem   Laurent Gautier
    • [BioC] org.*.eg.db problem   Marc Carlson
  • [BioC] org.*.eg.db problem   Vincent Carey
• [BioC] [GEOquery] Problem with downloading GSE   Guillaume Mouron
• [BioC] CDF file for Mouse Gene 1.1 ST Array   Lucia Peixoto
  • [BioC] CDF file for Mouse Gene 1.1 ST Array   Mark Cowley
  • [BioC] CDF file for Mouse Gene 1.1 ST Array   Pascal Gellert
    • [BioC] CDF file for Mouse Gene 1.1 ST Array   Lucia Peixoto
      • [BioC] CDF file for Mouse Gene 1.1 ST Array   Pascal Gellert
      • [BioC] CDF file for Mouse Gene 1.1 ST Array   Hooiveld, Guido
      • [BioC] CDF file for Mouse Gene 1.1 ST Array   Groot, Philip de
• [BioC] HTqPCR question   Simon Melov
  • [BioC] HTqPCR question   Heidi Dvinge
• [BioC] Problems accessing Ensembl archive 59 with EnsEMBL   aedin culhane
  • [BioC] Problems accessing Ensembl archive 59 with EnsEMBL   Rhoda Kinsella
    • [BioC] Problems accessing Ensembl archive 59 with EnsEMBL   aedin culhane
      • [BioC] Problems accessing Ensembl archive 59 with EnsEMBL   Rhoda Kinsella
• [BioC] graph::join discards node and edge attributes   Nishant Gopalakrishnan
  • [BioC] graph::join discards node and edge attributes   Paul Shannon
    • [BioC] graph::join discards node and edge attributes   Nishant Gopalakrishnan
• [BioC] permutation   Peevi Ijkl
  • [BioC] permutation   Steve Lianoglou
• [BioC] Error coerce in AffyQCReport   Lorenzo Melchor
  • [BioC] Error coerce in AffyQCReport   mtmorgan at fhcrc.org
• [BioC] Problems running oneChannelGUI   Marcos Pinho
  • [BioC] Problems running oneChannelGUI   Mark Cowley
    • [BioC] Problems running oneChannelGUI   Marcos Pinho
• [BioC] Help with GSEA package   Jillian Rowe
  • [BioC] Help with GSEA package   Martin Morgan
• [BioC] topGO and Arabidopsis data   Johannes Hanson
  • [BioC] topGO and Arabidopsis data   Adrian Alexa
• [BioC] The trimmed mean target intensity of each array was arbitrarily set to 100   viritha kaza
• [BioC] [GEOquery] Problem with downloading GSE   Guillaume Mouron
  • [BioC] [GEOquery] Problem with downloading GSE   Sean Davis
    • [BioC] [GEOquery] Problem with downloading GSE   Guillaume Mouron
• [BioC] permutation   Steve Lianoglou
  • [BioC] permutation   James W. MacDonald
• [BioC] Note on xps and tRMA   cstrato
  • [BioC] Note on xps and tRMA   Mark Cowley
    • [BioC] Note on xps and tRMA   Henrik Bengtsson
    • [BioC] Note on xps and tRMA   cstrato
• [BioC] missing value where TRUE/FALSE needed (metaArray)   Reema Singh
• [BioC] Insert entrez gene ID and gene symbol and name on TopTable for hugene1.0st arrays   Marcos Pinho
  • [BioC] Insert entrez gene ID and gene symbol and name on TopTable for hugene1.0st arrays   James W. MacDonald
• [BioC] Talks (PDFs) from the Bioconductor Developer Meeting Europe in Heidelberg on 2010-11-17/18   Wolfgang Huber
• [BioC] maping SNPs   Simon Noël
  • [BioC] maping SNPs   Hervé Pagès
    • [BioC] RE : maping SNPs   Simon Noël
      • [BioC] RE : maping SNPs   Valerie Obenchain
• [BioC] rtracklayer issues with other packages?   mattia pelizzola
  • [BioC] rtracklayer issues with other packages?   Michael Lawrence
    • [BioC] rtracklayer issues with other packages?   Martin Morgan
• [BioC] problem installing 'GLAD' package   Shenglin Zheng
• [BioC] problem installing 'GLAD' package   Shenglin Zheng
• [BioC] gage package: biological replicates and technical replicates   heyi xiao
  • [BioC] gage package: biological replicates and technical replicates   Luo Weijun
• [BioC] UCSC rtracklayer error "transfer closed with outstanding read data remaining"   Mark Robinson
  • [BioC] UCSC rtracklayer error "transfer closed with outstanding read data remaining"   Keith Satterley
  • [BioC] UCSC rtracklayer error "transfer closed with outstanding read data remaining"   Michael Lawrence
• [BioC] Illumina CanineHD CNV & crlmm?   Matthew Ritchie
• [BioC] timecourse: modt1 not found   Steve Ladunga
• [BioC] problem with beadarray package 2.0   Daniela Albrecht
  • [BioC] problem with beadarray package 2.0   Tim Triche
• [BioC] ChIPpeakAnno venn diagram statistics   Ester Feldmesser
  • [BioC] ChIPpeakAnno venn diagram statistics   Noah Dowell
    • [BioC] ChIPpeakAnno venn diagram statistics   Ester Feldmesser
      • [BioC] ChIPpeakAnno venn diagram statistics   Zhu, Lihua (Julie)
      • [BioC] ChIPpeakAnno venn diagram statistics   Ester Feldmesser
      • [BioC] ChIPpeakAnno venn diagram statistics   Ester Feldmesser
      • [BioC] ChIPpeakAnno venn diagram statistics   Noah Dowell
• [BioC] A question about outputting GO annotation   Zhu, Lihua (Julie)
• [BioC] a workflow of population genomic operations/analysis using bioconductor   Mao Jianfeng
  • [BioC] a workflow of population genomic operations/analysis using bioconductor   Vincent Carey
  • [BioC] a workflow of population genomic operations/analysis using bioconductor   Michael Lawrence
• [BioC] how to go from an short read alignment file to a SNPs table for population genetic analysis   Mao Jianfeng
  • [BioC] how to go from an short read alignment file to a SNPs table for population genetic analysis   Sean Davis
    • [BioC] how to go from an short read alignment file to a SNPs table for population genetic analysis   Vincent Carey
      • [BioC] how to go from an short read alignment file to a SNPs table for population genetic analysis   Michael Lawrence
• [BioC] imageHTS Segmentation Functions   Alex Gutteridge
  • [BioC] imageHTS Segmentation Functions   Wolfgang Huber
• [BioC] miRNA Array from Affymetrix   Claudia Döring
  • [BioC] miRNA Array from Affymetrix   Hooiveld, Guido
    • [BioC] miRNA Array from Affymetrix   Alex Gutteridge
      • [BioC] CDF for miRNA-1_0_2Xgain (was: miRNA Array from Affymetrix)   Hooiveld, Guido
      • [BioC] miRNA Array from Affymetrix   Claudia Döring
• [BioC] ChIPpeakAnno makeVennDiagram   Binbin Liu
  • [BioC] ChIPpeakAnno makeVennDiagram   Zhu, Lihua (Julie)
• [BioC] How do I set the median when performing MAS5.0 normalization   Matthew Willmann
  • [BioC] How do I set the median when performing MAS5.0 normalization   James W. MacDonald
    • [BioC] How do I set the median when performing MAS5.0 normalization   Matthew Willmann
• [BioC] how to go from an short read alignment file to a SNPs table for population genetic analysis   Sean Davis
• [BioC] two way anova with interaction effect : limma package   John Antony Gaspar
  • [BioC] two way anova with interaction effect : limma package   James W. MacDonald
• [BioC] gProcessed Signal normalization using cyclic loess   viritha kaza
  • [BioC] gProcessed Signal normalization using cyclic loess   Martin Morgan
    • [BioC] gProcessed Signal normalization using cyclic loess   Wei Shi
      • [BioC] gProcessed Signal normalization using cyclic loess   Sean Davis
      • [BioC] gProcessed Signal normalization using cyclic loess   Wei Shi
      • [BioC] gProcessed Signal normalization using cyclic loess   Sean Davis
      • [BioC] gProcessed Signal normalization using cyclic loess   viritha kaza
      • [BioC] gProcessed Signal normalization using cyclic loess   Wei Shi
      • [BioC] gProcessed Signal normalization using cyclic loess   viritha kaza
      • [BioC] gProcessed Signal normalization using cyclic loess   Wei Shi
      • [BioC] gProcessed Signal normalization using cyclic loess   viritha kaza
      • [BioC] gProcessed Signal normalization using cyclic loess   Wei Shi
      • [BioC] gProcessed Signal normalization using cyclic loess   viritha kaza
• [BioC] analysing NimbleGen CGH for CNV   Adeolu Adewoye
• [BioC] DESeq questions   Shreyartha Mukherjee
  • [BioC] DESeq questions   Simon Anders
  • [BioC] DESeq questions   Simon Anders
• [BioC] How do I set the median when performing MAS5.0 normalization   James MacDonald
  • [BioC] How do I set the median when performing MAS5.0 normalization   Matthew Willmann
    • [BioC] How do I set the median when performing MAS5.0 normalization   James W. MacDonald
• [BioC] Single channel array, limma and imagene   Carla Zammit
  • [BioC] Single channel array, limma and imagene   James W. MacDonald
    • [BioC] Single channel array, limma and imagene   Carla Zammit
• [BioC] Single channel array, limma and imagene   Carla Zammit
• [BioC] equiry about GAGE   Luo Weijun
• [BioC] BSgenome package for a. thaliana   oleg at stat.berkeley.edu
  • [BioC] BSgenome package for a. thaliana   Hervé Pagès
    • [BioC] BSgenome package for a. thaliana   Hervé Pagès
• [BioC] stop   Daniel M.
  • [BioC] stop   Marc Carlson
• [BioC] POE/metaArray error   Sheena Scroggins
• [BioC] Help for setting up design and contrast matrix   John Antony Gaspar
• [BioC] combineBeadLevelLists() in Bioconductor 2.8 beadarray   Alex Gutteridge
  • [BioC] combineBeadLevelLists() in Bioconductor 2.8 beadarray   Mark Dunning
    • [BioC] combineBeadLevelLists() in Bioconductor 2.8 beadarray   Alex Gutteridge
      • [BioC] combineBeadLevelLists() in Bioconductor 2.8 beadarray   Mark Dunning
      • [BioC] combineBeadLevelLists() in Bioconductor 2.8 beadarray   Alex Gutteridge
• [BioC] PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress   B.Misovic at lumc.nl
  • [BioC] PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress   cstrato
  • [BioC] PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress   Benilton Carvalho
  • [BioC] PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress   Roman Jaksik
• [BioC] FW: PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress   Ramil Nurtdinov
  • [BioC] FW: PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress   cstrato
• [BioC] 4 main questions about making complicated model matrix and fitting the model   Mingkwan Nipitwattanaphon
• [BioC] ChIPpeakAnno makeVennDiagram   Zhu, Lihua (Julie)
• [BioC] SPL extension   Lakshmi Kastury
• [BioC] RandomForest, supervised machine learning and uncertainty   January Weiner
  • [BioC] RandomForest, supervised machine learning and uncertainty   Vincent Carey
    • [BioC] RandomForest, supervised machine learning and uncertainty   Sean Davis
    • [BioC] RandomForest, supervised machine learning and uncertainty   January Weiner
      • [BioC] RandomForest, supervised machine learning and uncertainty   Moshe Olshansky
• [BioC] Single channel array, limma and imagene   James W. MacDonald
• [BioC] interactions of range(flowFrame) with transform, densityplot and splom   Mroz, Edmund A.
• [BioC] SPIA package with updated KEGG pathways   Bhaskar Dutta
  • [BioC] SPIA package with updated KEGG pathways   Marc Carlson
• [BioC] ExonMap and xmap package question   Zhu, Lihua (Julie)
  • [BioC] ExonMap and xmap package question   Zhu, Lihua (Julie)
• [BioC] ToggleProbe() and Arabidopsis annotation file ath1121501.db.   Song Li
  • [BioC] ToggleProbe() and Arabidopsis annotation file ath1121501.db.   Marc Carlson
• [BioC] CRLMM calls to forward strand genotypes?   Hollis Wright
• [BioC] EdgeR - problems running estimateCRDisp   Davis McCarthy
• [BioC] how to combine p values?   Reema Singh
  • [BioC] how to combine p values?   Moshe Olshansky
    • [BioC] how to combine p values?   Paul Leo
    • [BioC] how to combine p values?   Nikhil Garge
      • [BioC] how to combine p values?   Moshe Olshansky
• [BioC] FW: PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress   B.Misovic at lumc.nl
• [BioC] Complete newbie - reconstruct array image with only data file?   D M
  • [BioC] Complete newbie - reconstruct array image with only data file?   Mark Dunning
    • [BioC] Complete newbie - reconstruct array image with only data file?   D M
      • [BioC] Complete newbie - reconstruct array image with only data file?   Steve Lianoglou
• [BioC] Combining Affymetrix miRNA samples from different arrays   Michal Blazejczyk
  • [BioC] Combining Affymetrix miRNA samples from different arrays   James W. MacDonald
• [BioC] Rgraphviz running problem on vista   xyang2
• [BioC] Statistics and Bioinformatics Positions, Novartis Molecular Diagnostics, Cambridge MA USA and Basel, Switzerland   A.J. Rossini
• [BioC] How to obtain summarized data without normalization   Li, Aiguo (NIH/NCI) [E]
  • [BioC] How to obtain summarized data without normalization   James W. MacDonald
    • [BioC] How to obtain summarized data without normalization   Li, Aiguo (NIH/NCI) [E]
      • [BioC] How to obtain summarized data without normalization   Sean Davis
      • [BioC] How to obtain summarized data without normalization   Rick Frausto
• [BioC] Question about TranscriptDb and makeTranscriptDb method   Song Li
  • [BioC] Question about TranscriptDb and makeTranscriptDb method   Hervé Pagès
    • [BioC] Question about TranscriptDb and makeTranscriptDb method   Song Li
      • [BioC] Question about TranscriptDb and makeTranscriptDb method   Marc Carlson
• [BioC] Bioconductor Digest, Vol 94, Issue 10   Tarca, Adi
• [BioC] About package beadarray   Changhe Fu
  • [BioC] About package beadarray   Mark Dunning
• [BioC] limma: paired samples, before and after treatment   Vierlinger Klemens
  • [BioC] limma: paired samples, before and after treatment   James W. MacDonald
• [BioC] Rgraphviz running problem on vista   Martin Morgan
  • [BioC] RCytoscape [was Re: Rgraphviz running problem on vista]   Paul Shannon
• [BioC] SOLiD color space data   Neel Aluru
  • [BioC] [Bioc-sig-seq] SOLiD color space data   Martin Morgan
    • [BioC] [Bioc-sig-seq] SOLiD color space data   Neel Aluru
      • [BioC] [Bioc-sig-seq] SOLiD color space data   Martin Morgan
      • [BioC] [Bioc-sig-seq] SOLiD color space data   Neel Aluru
      • [BioC] [Bioc-sig-seq] SOLiD color space data   Steve Lianoglou
      • [BioC] [Bioc-sig-seq] SOLiD color space data   Neel Aluru
      • [BioC] [Bioc-sig-seq] SOLiD color space data   Steve Lianoglou
• [BioC] 4 main questions about making complicated model matrix and fitting the model   Gordon K Smyth
• [BioC] SOLiD color space data   rcaloger
  • [BioC] SOLiD color space data   Neel Aluru
• [BioC] qPCR 2011 Symposium Talk and Poster CALL   qPCR 2011 event announcement
• [BioC] Problems with the package GEOsubission   Alexandre Kuhn
  • [BioC] Problems with the package GEOsubission   Fabian Grammes
• [BioC] Paired Data in maSigPro   Mike Walter
• [BioC] GEOquery error   Reema Singh
  • [BioC] GEOquery error   Dan Tenenbaum
  • [BioC] GEOquery error   Sean Davis
• [BioC] booklet on using R for biomedical statistics   Coghlan, Avril
  • [BioC] booklet on using R for biomedical statistics   Richard Friedman
    • [BioC] booklet on using R for biomedical statistics   Vincent Carey
      • [BioC] booklet on using R for biomedical statistics   Coghlan, Avril
      • [BioC] booklet on using R for biomedical statistics   Stijn van Dongen
      • [BioC] booklet on using R for biomedical statistics   Keith Satterley
      • [BioC] booklet on using R for biomedical statistics   Saroj K Mohapatra
      • [BioC] booklet on using R for biomedical statistics   Andrew Dalby
  • [BioC] booklet on using R for biomedical statistics   Rinku Saha
  • [BioC] booklet on using R for biomedical statistics   Jin, Jp
• [BioC] R packages for position anotation?   Jinyan Huang
  • [BioC] R packages for position anotation?   Steve Lianoglou
    • [BioC] R packages for position anotation?   Jinyan Huang
      • [BioC] R packages for position anotation?   Steve Lianoglou
• [BioC] countOverlaps() only count positive strand (from GenomicRanges example)   Song Li
  • [BioC] countOverlaps() only count positive strand (from GenomicRanges example)   Vincent Carey
    • [BioC] countOverlaps() only count positive strand (from GenomicRanges example)   Martin Morgan
      • [BioC] countOverlaps() only count positive strand (from GenomicRanges example)   Song Li
      • [BioC] countOverlaps() only count positive strand (from GenomicRanges example)   Vincent Carey
      • [BioC] countOverlaps() only count positive strand (from GenomicRanges example)   Martin Morgan
      • [BioC] countOverlaps() only count positive strand (from GenomicRanges example)   Song Li
      • [BioC] countOverlaps() only count positive strand (from GenomicRanges example)   Michael Lawrence
      • [BioC] countOverlaps() only count positive strand (from GenomicRanges example)   Jason
      • [BioC] countOverlaps() only count positive strand (from GenomicRanges example)   Hervé Pagès
• [BioC] Xmapcore package   Zhu, Lihua (Julie)
• [BioC] readAligned input failed?   ANYOU WANG
  • [BioC] readAligned input failed?   Martin Morgan
    • [BioC] readAligned input failed?   ANYOU WANG
  • [BioC] readAligned input failed?   ANYOU WANG
• [BioC] Xmapcore package   Zhu, Lihua (Julie)
  • [BioC] Xmapcore package   Crispin Miller
• [BioC] Xmapcore package: check a position whether it is in a probe or probeset.   Jinyan Huang
  • [BioC] Xmapcore package: check a position whether it is in a probe or probeset.   Tim Yates
    • [BioC] Xmapcore package: check a position whether it is in a probe or probeset.   Tim Yates
      • [BioC] Xmapcore package: check a position whether it is in a probe or probeset.   Jinyan Huang
      • [BioC] Xmapcore package: check a position whether it is in a probe or probeset.   Jinyan Huang
• [BioC] affy package and ST arrays   Michal Blazejczyk
  • [BioC] affy package and ST arrays   Hooiveld, Guido
    • [BioC] affy package and ST arrays   Jeremy Gollub
    • [BioC] affy package and ST arrays   Mike Smith
  • [BioC] affy package and ST arrays   cstrato
• [BioC] BioMart connection problem   Paul Leo
  • [BioC] BioMart connection problem   Paul Leo
    • [BioC] BioMart connection problem   Martin Morgan
  • [BioC] BioMart connection problem   Rhoda Kinsella
    • [BioC] BioMart connection problem   Paul Leo
  • [BioC] BioMart connection problem   arne.mueller at novartis.com
• [BioC] Problems creating CDF environment for Affymetrix SNP Array   Christoph Standfuß
  • [BioC] Problems creating CDF environment for Affymetrix SNP Array   James W. MacDonald
• [BioC] Bioinformatics Opening @ Barts Cancer Centre   Claude Chelala
• [BioC] Error when GGtools loading   Mao Jianfeng
  • [BioC] Error when GGtools loading   Vincent Carey
• [BioC] Agilent Feature Extraction Software vs GenePix Pro   Juan Carlos Oliveros
• [BioC] Introductory course on GeneChip®Exon 1.0 ST & NGS microRNA data analysis Feb 2011   rcaloger
• [BioC] Unable to Generate QC Report for mogene10stv1   Rick Frausto
  • [BioC] Unable to Generate QC Report for mogene10stv1   James W. MacDonald
    • [BioC] Unable to Generate QC Report for mogene10stv1   Rick Frausto
      • [BioC] Unable to Generate QC Report for mogene10stv1   James W. MacDonald
      • [BioC] Unable to Generate QC Report for mogene10stv1   Rick Frausto
      • [BioC] Unable to Generate QC Report for mogene10stv1   Rick Frausto
      • [BioC] Unable to Generate QC Report for mogene10stv1   James W. MacDonald
      • [BioC] Unable to Generate QC Report for mogene10stv1   Rick Frausto
      • [BioC] Unable to Generate QC Report for mogene10stv1   James W. MacDonald
• [BioC] biomaRt - attribute mirbase is missing   Neel Aluru
  • [BioC] biomaRt - attribute mirbase is missing   Rhoda Kinsella
• [BioC] R packages for position anotation?   Steve Lianoglou
• [BioC] Agilent annotation package for Drosophila   Clement Chow
  • [BioC] Agilent annotation package for Drosophila   Marc Carlson
    • [BioC] Agilent annotation package for Drosophila   Yong Li
• [BioC] unable to install the package mogene10stv1cdf   Ming Zheng
• [BioC] limma report logFC confidence interval?   Timothy Wu
• [BioC] Is there a place to download GenomicFeatures' sqlite from ensembl.   Fabrice Tourre
  • [BioC] Is there a place to download GenomicFeatures' sqlite from ensembl.   Michael Lawrence
    • [BioC] Is there a place to download GenomicFeatures' sqlite from ensembl.   Marc Carlson
      • [BioC] Is there a place to download GenomicFeatures' sqlite from ensembl.   Fabrice Tourre
• [BioC] Using FLUSH filter in Human Gene ST Arrays   Oriol SENAN
  • [BioC] Using FLUSH filter in Human Gene ST Arrays   Martin Morgan
• [BioC] On extending class ExpressionSet   Renaud Gaujoux
  • [BioC] On extending class ExpressionSet   Martin Morgan
    • [BioC] On extending class ExpressionSet   Renaud Gaujoux
      • [BioC] On extending class ExpressionSet   Martin Morgan
      • [BioC] On extending class ExpressionSet   Renaud Gaujoux
• [BioC] Introduction into R   Anja Lachenmayer
  • [BioC] Introduction into R   Vincent Carey
• [BioC] unable to install mogene10stv1cdf   Ming Zheng
  • [BioC] unable to install mogene10stv1cdf   James W. MacDonald
• [BioC] Modeling of methylation status using lumi   Pan Du
• [BioC] New Lumi data fails to load via lumiR   Thomas Hampton
  • [BioC] New Lumi data fails to load via lumiR   Gilbert Feng
    • [BioC] New Lumi data fails to load via lumiR   Thomas Hampton
      • [BioC] New Lumi data fails to load via lumiR   Gang Feng
• [BioC] Conversion of affymetrix cell file to raw text file   viritha kaza
  • [BioC] Conversion of affymetrix cell file to raw text file   viritha kaza
    • [BioC] Conversion of affymetrix cell file to raw text file   James W. MacDonald
      • [BioC] Conversion of affymetrix cell file to raw text file   viritha kaza
      • [BioC] Conversion of affymetrix cell file to raw text file   James W. MacDonald
      • [BioC] Conversion of affymetrix cell file to raw text file   viritha kaza
      • [BioC] Conversion of affymetrix cell file to raw text file   James W. MacDonald
      • [BioC] Conversion of affymetrix cell file to raw text file   viritha kaza
      • [BioC] Conversion of affymetrix cell file to raw text file   James W. MacDonald
      • [BioC] Conversion of affymetrix cell file to raw text file   viritha kaza
• [BioC] problems with readIllumina()   Ina Hoeschele
  • [BioC] problems with readIllumina()   Mark Dunning
• [BioC] Problems using pdInfoBuilder to create an Affymetrix Mouse Diversity annotation package   Christoph Standfuß
  • [BioC] Problems using pdInfoBuilder to create an Affymetrix Mouse Diversity annotation package   Benilton Carvalho
    • [BioC] Problems using pdInfoBuilder to create an Affymetrix Mouse Diversity annotation package   Benilton Carvalho
      • [BioC] Problems using pdInfoBuilder to create an Affymetrix Mouse Diversity annotation package   Christoph Standfuß
• [BioC] Is there a place to download GenomicFeatures'   Wenzhang Wang
  • [BioC] Is there a place to download GenomicFeatures'   Steve Lianoglou
    • [BioC] Is there a place to download GenomicFeatures'   Marc Carlson
• [BioC] consistant Heatmap image based on number of genes and size of samples? - help   Saurin D. Jani
  • [BioC] consistant Heatmap image based on number of genes and size of samples? - help   Iain Gallagher
• [BioC] Merging bioconductor lumi annotations with lumi output   Thomas Hampton
• [BioC] extracting IDs from topGO results object   Paul Rigor
• [BioC] Fwd: KEGGgraph / Rgraphviz dot layout   Unger, Kristian
  • [BioC] Fwd: KEGGgraph / Rgraphviz dot layout   Jitao David Zhang
    • [BioC] Fwd: KEGGgraph / Rgraphviz dot layout   Unger, Kristian
      • [BioC] Fwd: KEGGgraph / Rgraphviz dot layout   Jitao David Zhang
• [BioC] crlmm - Infinium iSelect HD Custom Genotyping   Richard Finkers
  • [BioC] crlmm - Infinium iSelect HD Custom Genotyping   Matthew Ritchie
• [BioC] Merging bioconductor lumi annotations with lumi output   Pan Du
• [BioC] DESeq with no replicates   Wu, Xiwei
  • [BioC] DESeq with no replicates   Wolfgang Huber
• [BioC] xps package where is mask for exon arrays explained   Achilleas Pitsillides
  • [BioC] xps package where is mask for exon arrays explained   cstrato
• [BioC] Linear Models and ANOVA   Thomas Hampton
  • [BioC] Linear Models and ANOVA   James W. MacDonald
• [BioC] : [R] Problems wih EBImage for windows 7   Evan Misshula
  • [BioC] : [R] Problems wih EBImage for windows 7   Gregoire Pau
• [BioC] usage stats for bioconductor   Patrick Leyshock
  • [BioC] usage stats for bioconductor   Martin Morgan
• [BioC] copy number/LOH for Affy 100K   array chip
• [BioC] missing reads in alignerBAM   Daniel.Berner at unibas.ch
  • [BioC] missing reads in alignerBAM   Martin Morgan
• [BioC] GEOquery GSElimits   James F. Reid
  • [BioC] GEOquery GSElimits   Sean Davis
• [BioC] Rgraphviz installation failure with R 2.12.0   Mary Putt
  • [BioC] Rgraphviz installation failure with R 2.12.0   Martin Morgan
• [BioC] Accessing next gen sequence data remotely via biocondcutor   Ruppert Valentino
  • [BioC] Accessing next gen sequence data remotely via biocondcutor   Martin Morgan
• [BioC] pheatmap function is in Which package? - help   Iain Gallagher
  • [BioC] pheatmap function is in Which package? - help   Saurin D. Jani
• [BioC] LIMMA and Agilent single color   De Boever Patrick
• [BioC] problem with function   Iain Gallagher
  • [BioC] problem with function   cstrato
    • [BioC] problem with function   Iain Gallagher
      • [BioC] problem with function   cstrato
      • [BioC] problem with function   Iain Gallagher
      • [BioC] problem with function   cstrato
      • [BioC] problem with function   Iain Gallagher
      • [BioC] problem with function   Iain Gallagher
      • [BioC] problem with function   cstrato
• [BioC] desktop workstation configuration   Shi, Tao
  • [BioC] desktop workstation configuration   Steve Lianoglou
  • [BioC] desktop workstation configuration   Thomas Girke
    • [BioC] desktop workstation configuration   Shi, Tao
• [BioC] Limma B statistic   Sabrina AT Case
  • [BioC] Limma B statistic   Wolfgang Huber
  • [BioC] Limma B statistic   Darlene Goldstein
• [BioC] codes   Peevi Ijkl
  • [BioC] codes   Saurin D. Jani
  • [BioC] codes   Steve Lianoglou
• [BioC] extracting topGO gene ids from result object   Paul Rigor
  • [BioC] extracting topGO gene ids from result object   Valerie Obenchain
    • [BioC] extracting topGO gene ids from result object   Paul Rigor
      • [BioC] extracting topGO gene ids from result object   Paul Rigor
• [BioC] question about R package to get gene centric values   Xiaowei Guan
  • [BioC] question about R package to get gene centric values   Paul Geeleher
    • [BioC] question about R package to get gene centric values   Xiaowei Guan
• [BioC] Bioconductor Digest, Vol 94, Issue 17   Wenzhang Wang
• [BioC] Dependency Problems for Windows 7 EBImage and ImageMagic "can't load Error in library.dynam(lib, package, package.lib) : shared library 'EBImage' not found"   Evan Misshula
• [BioC] Dependency Problems for Windows 7 EBImage and ImageMagic "can't load Error in library.dynam(lib, package, package.lib) : shared library 'EBImage' not found"--solved   Evan Misshula
• [BioC] trying to build configure.exe for dependent imageMagic library from source on Win 7--Cannot open include file: 'afxwin.h': No such file or directory   Evan Misshula
• [BioC] How to install BioConductor packages with a computer behind a proxy   Barco You
  • [BioC] How to install BioConductor packages with a computer behind a proxy   Martin Morgan
• [BioC] test class label   Peevi Ijkl
  • [BioC] test class label   Martin Morgan
• [BioC] Rgraphviz in windows 7 - problem with GUI?   Alessandro Magrini
  • [BioC] Rgraphviz in windows 7 - problem with GUI?   Martin Morgan
    • [BioC] Rgraphviz in windows 7 - problem with GUI?   Alessandro Magrini
      • [BioC] Rgraphviz in windows 7 - problem with GUI?   Fraser Sim
      • [BioC] Rgraphviz in windows 7 - problem with GUI?   Alessandro Magrini
      • [BioC] Rgraphviz in windows 7 - problem with GUI?   zhiqun tang
      • [BioC] Rgraphviz in windows 7 - problem with GUI?   Fraser Sim
      • [BioC] Rgraphviz in windows 7 - problem with GUI?   Martin Morgan
      • [BioC] Rgraphviz in windows 7 - problem with GUI?   zhiqun tang
• [BioC] problem with function   Iain Gallagher
• [BioC] class label   Peevi Ijkl
  • [BioC] class label   Martin Morgan
    • [BioC] class label   Peevi Ijkl
      • [BioC] class label   Martin Morgan
• [BioC] hierarchial clustering   Swati Sinha
  • [BioC] hierarchial clustering   Thomas Girke
• [BioC] : [R] Problems wih EBImage for windows 7 --Loading required package: abind Error in library.dynam(lib, package, package.lib) : shared library 'EBImage' not found--SOLVED   Evan Misshula
• [BioC] LIMMA and Agilent single color   Gordon K Smyth
  • [BioC] LIMMA and Agilent single color   De Boever Patrick
• [BioC] Rgraphviz installation failure with R 2.12.0   Mary Putt
  • [BioC] Rgraphviz installation failure with R 2.12.0   Martin Morgan
• [BioC] affymetrix annotation   arne.mueller at novartis.com
  • [BioC] affymetrix annotation   Cristobal Fresno Rodríguez
  • [BioC] affymetrix annotation   James W. MacDonald
    • [BioC] affymetrix annotation   arne.mueller at novartis.com
      • [BioC] affymetrix annotation   James W. MacDonald
• [BioC] Quality Control of Exon arrays using xps?   Achilleas Pitsillides
  • [BioC] Quality Control of Exon arrays using xps?   cstrato
    • [BioC] Quality Control of Exon arrays using xps?   Achilleas Pitsillides
      • [BioC] Quality Control of Exon arrays using xps?   cstrato
• [BioC] ESD files from Beckman   Wolfgang Huber
• [BioC] How do I use biomaRt to get upstreamFlank Genomic Sequence for many Genomes?   Noah Dowell
• [BioC] affymetrix annotation   Tim Yates
• [BioC] lumi for Illumina methylation data - understanding the colour adjustment   Pan Du
  • [BioC] lumi for Illumina methylation data - understanding the colour adjustment   Lavinia Gordon
    • [BioC] lumi for Illumina methylation data - understanding the colour adjustment   Pan Du
      • [BioC] lumi for Illumina methylation data - understanding the colour adjustment   Lavinia Gordon
• [BioC] Performing basic Multiple Sequence Alignment in R?   Tal Galili
  • [BioC] [R] Performing basic Multiple Sequence Alignment in R?   Mike Marchywka
• [BioC] Performing basic Multiple Sequence Alignment in R?   Tal Galili
  • [BioC] Performing basic Multiple Sequence Alignment in R?   Thomas Girke
• [BioC] Mining expression data   Radhouane Aniba
  • [BioC] Mining expression data   Sean Davis
• [BioC] Rgraphviz Windows 7   Mary Putt
• [BioC] affymetrix annotation   Tim Yates
• [BioC] Idea that needs feedback   Radhouane Aniba
  • [BioC] Idea that needs feedback   Susan R. Atlas
  • [BioC] Idea that needs feedback   arne.mueller at novartis.com
    • [BioC] Idea that needs feedback   Radhouane Aniba
• [BioC] Error in dimnames(x) <- dn :   Feseha Abebe-Akele
• [BioC] Annotate getSEQ weird behaviour.   Giulio Di Giovanni
  • [BioC] Annotate getSEQ weird behaviour.   Martin Morgan
• [BioC] question about DeSeq   vasu punj
  • [BioC] question about DeSeq   Simon Anders
    • [BioC] question about DeSeq   Martin Morgan
      • [BioC] question about DeSeq   Martin Morgan
• [BioC] simpleaffy qcdef for hugene 1.0 st?   Vincent Carey
• [BioC] simpleaffy qcdef for hugene 1.0 st?   James MacDonald
• [BioC] Idea that needs feedback   Radhouane Aniba
  • [BioC] Idea that needs feedback   Saurin D. Jani
  • [BioC] Idea that needs feedback   Evan Misshula
    • [BioC] Idea that needs feedback   Radhouane Aniba
      • [BioC] Idea that needs feedback   Gogol, Madelaine
      • [BioC] Idea that needs feedback   Radhouane Aniba
      • [BioC] Idea that needs feedback   Radhouane Aniba
      • [BioC] Idea that needs feedback   Radhouane Aniba
• [BioC] RE : maping SNPs; first foundation challenge offered   Vincent Carey
• [BioC] Question on displaying color photo as Greyscale in EBImage   Evan Misshula
  • [BioC] Question on displaying color photo as Greyscale in EBImage   Gregoire Pau
• [BioC] Paired Data in maSigPro   Mike Walter
• [BioC] problem extending Category classes   Robert M. Flight
  • [BioC] problem extending Category classes   Martin Morgan
    • [BioC] problem extending Category classes   Robert M. Flight
• [BioC] subsetting   Peevi Ijkl
  • [BioC] subsetting   Sean Davis
• [BioC] makeTranscriptDbFromUCSC() fails to download table   Burak Kutlu
  • [BioC] makeTranscriptDbFromUCSC() fails to download table   Steve Lianoglou
    • [BioC] makeTranscriptDbFromUCSC() fails to download table   Burak Kutlu
      • [BioC] makeTranscriptDbFromUCSC() fails to download table   Vincent Carey
      • [BioC] makeTranscriptDbFromUCSC() fails to download table   Ann Loraine
      • [BioC] makeTranscriptDbFromUCSC() fails to download table   Dan Tenenbaum
      • [BioC] makeTranscriptDbFromUCSC() fails to download table   Michael Lawrence
• [BioC] Bioconductor overview course Boston: 14 Jan 2011   Vincent Carey
• [BioC] Problems of CDF environment while doing RMA   Shan Dong
  • [BioC] Problems of CDF environment while doing RMA   Wolfgang Huber
• [BioC] Error with microRNA.org2df.fun (CORNA package)   joseph
• [BioC] HTqPCR problem   Sandra Romero Cordoba
• [BioC] limma, remove two type of batch effect   Fabrice Tourre
  • [BioC] limma, remove two type of batch effect   Tim Triche
• [BioC] Regarding to ChIPpeakAnno package   Zhu, Lihua (Julie)
• [BioC] question about how to choose the probe value that corresponding to a gene   Xiaowei Guan
• [BioC] Confused about IRanges::nearest, precede, follow functions/docs.   Steve Lianoglou
  • [BioC] Confused about IRanges::nearest, precede, follow functions/docs.   Michael Lawrence
    • [BioC] Confused about IRanges::nearest, precede, follow functions/docs.   Steve Lianoglou
• [BioC] Question about package "RpsiXML", URL as input for parsePsimi25Interaction()   Qian Liu
  • [BioC] Question about package "RpsiXML", URL as input for parsePsimi25Interaction()   Dan Tenenbaum
    • [BioC] Question about package "RpsiXML", URL as input for parsePsimi25Interaction()   Jitao David Zhang
      • [BioC] Question about package "RpsiXML", URL as input for parsePsimi25Interaction()   Tony Chiang
• [BioC] how to simulate the microarray data set?   Xiaowei Guan
• [BioC] Using biomaRt for getting Go Terms   chawla
  • [BioC] Using biomaRt for getting Go Terms   Hans-Rudolf Hotz
• [BioC] question about get a summary gene expression information from the probe set associated with one specific gene   Xiaowei Guan
• [BioC] Is there any way to get upstream and downstream gene symbol?   Prashantha Hebbar
  • [BioC] Is there any way to get upstream and downstream gene symbol?   Martin Morgan

Last message date: Fri Dec 31 22:22:27 CET 2010
Archived on: Fri Dec 31 22:22:50 CET 2010

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