[BioC] Is there a place to download GenomicFeatures'

Steve Lianoglou mailinglist.honeypot at gmail.com
Thu Dec 16 16:53:01 CET 2010


On Thu, Dec 16, 2010 at 9:09 AM, Wenzhang Wang <052023069 at fudan.edu.cn> wrote:
> Dear all,
> When I am trying to run the follwing codes , the R is dead with no response:
> either
>> txdb <- makeTranscriptDbFromUCSC(genome="hg19", tablename="refGene")
> or
>> txdb <- makeTranscriptDbFromUCSC(genome="hg19", tablename="knownGene")

This is working for me -- perhaps you are having some connectivity problems?

R> sessionInfo()
R version 2.12.0 (2010-10-15)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] GenomicFeatures_1.2.3 GenomicRanges_1.2.1   IRanges_1.8.5

Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact

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