[BioC] pheatmap function is in Which package? - help

[Saurin D. Jani]

Thank you Iain,

I will try that now. 

Thanks,
Saurin

--- On Fri, 12/17/10, Iain Gallagher <iaingallagher at btopenworld.com> wrote:

> From: Iain Gallagher <iaingallagher at btopenworld.com>
> Subject: Re: pheatmap function is in Which package? - help
> To: saurin_jani at yahoo.com
> Cc: "bioconductor" <bioconductor at stat.math.ethz.ch>
> Date: Friday, December 17, 2010, 10:45 AM
> http://cran.r-project.org/web/packages/pheatmap/index.html
> 
> cheers
> 
> iain
> 
> --- On Thu, 16/12/10, Saurin D. Jani <saurin_jani at yahoo.com>
> wrote:
> 
> > From: Saurin D. Jani <saurin_jani at yahoo.com>
> > Subject: pheatmap function is in Which package? -
> help
> > To: "Iain Gallagher" <iaingallagher at btopenworld.com>
> > Date: Thursday, 16 December, 2010, 18:49
> > Hi Iain,
> > 
> > could you please let me know which package I need to
> > download for that?
> > 
> > Thank you,
> > Saurin
> > 
> > --- On Thu, 12/16/10, Iain Gallagher <iaingallagher at btopenworld.com>
> > wrote:
> > 
> > > From: Iain Gallagher <iaingallagher at btopenworld.com>
> > > Subject: Re: [BioC] consistant Heatmap image
> based on
> > number of genes and size of samples? - help
> > > To: saurin_jani at yahoo.com
> > > Cc: "bioconductor" <bioconductor at stat.math.ethz.ch>
> > > Date: Thursday, December 16, 2010, 1:10 PM
> > > Hi Saurin
> > > 
> > > You could try the pheatmap function / lib. It
> tries to
> > pick
> > > sensible defaults for heatmaps.
> > > 
> > > best
> > > 
> > > i
> > > 
> > > --- On Thu, 16/12/10, Saurin D. Jani <saurin_jani at yahoo.com>
> > > wrote:
> > > 
> > > > From: Saurin D. Jani <saurin_jani at yahoo.com>
> > > > Subject: [BioC] consistant Heatmap image
> based
> > on
> > > number of genes and size of samples? - help
> > > > To: "Bioconductor Bioconductor" <bioconductor at stat.math.ethz.ch>
> > > > Date: Thursday, 16 December, 2010, 14:16
> > > > Hi BioC,
> > > > 
> > > > is there any function/parameter settings in
> > R/BioC
> > > which
> > > > adjusts the Heatmap image based on sample
> size
> > and
> > > number of
> > > > genes which needs to be plotted on image. 
> > > > 
> > > > The problem is when I generate Heatmap with
> :
> > > > 
> > > > bitmap(file = Hfile, type = "png16m", height
> =
> > MapH,
> > > width
> > > > = MapW, res = 72, units = "px",pointsize =
> 16);
> > > > 
> > > > where Hfile, MapH and MapW are variables I
> use
> > to
> > > generate
> > > > heatmap image file. (PNG)
> > > > 
> > > > 
> > > > 
> > > > if samples are 500 and genes are 300 ....
> it
> > works
> > > with
> > > > certain margin , height, width but if I do..
> 500
> > > samples and
> > > > 4 genes only..the size are too big..I mean
> its
> > obvious
> > > there
> > > > are less num. of genes to plot..but is there
> any
> > > parameter
> > > > settings which will adjust image size?
> > > > 
> > > > 
> > > > Thank you so much in advance,
> > > > Saurin
> > > > 
> > > >
> _______________________________________________
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> > > >
> > > 
> > 
> > 
> >       
> >
>