[BioC] New Lumi data fails to load via lumiR

[Gang Feng]

Hi, Tom

Have you installed lumiXXXAll.db, like lumiHumanAll.db, lumiMouseAll.db and
lumiRatAll.db?

Gilbert


> Thanks Gilbert.
>
> I updated R and lumi (see below), but I still get the dreaded result.
>
>  > data <- lumiR("FinalReport.txt")
> Please provide the annotation file or lumi annotation library!
>
>
>  > sessionInfo()
> R version 2.12.0 (2010-10-15)
> Platform: i386-apple-darwin9.8.0/i386 (32-bit)
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] lumi_2.2.0     Biobase_2.10.0
>
> loaded via a namespace (and not attached):
>   [1] affy_1.28.0           affyio_1.18.0         annotate_1.28.0
>   [4] AnnotationDbi_1.12.0  DBI_0.2-5             grid_2.12.0
>   [7] hdrcde_2.15           KernSmooth_2.23-4     lattice_0.19-13
> [10] MASS_7.3-8            Matrix_0.999375-44    methylumi_1.6.1
> [13] mgcv_1.6-2            nlme_3.1-97           preprocessCore_1.12.0
> [16] RSQLite_0.9-4         tcltk_2.12.0          tools_2.12.0
> [19] xtable_1.5-6
>  >
>
>