[BioC] New Lumi data fails to load via lumiR
Thomas Hampton
thomas.h.hampton at dartmouth.edu
Thu Dec 16 14:32:50 CET 2010
Thanks Gilbert.
I updated R and lumi (see below), but I still get the dreaded result.
> data <- lumiR("FinalReport.txt")
Please provide the annotation file or lumi annotation library!
> sessionInfo()
R version 2.12.0 (2010-10-15)
Platform: i386-apple-darwin9.8.0/i386 (32-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] lumi_2.2.0 Biobase_2.10.0
loaded via a namespace (and not attached):
[1] affy_1.28.0 affyio_1.18.0 annotate_1.28.0
[4] AnnotationDbi_1.12.0 DBI_0.2-5 grid_2.12.0
[7] hdrcde_2.15 KernSmooth_2.23-4 lattice_0.19-13
[10] MASS_7.3-8 Matrix_0.999375-44 methylumi_1.6.1
[13] mgcv_1.6-2 nlme_3.1-97 preprocessCore_1.12.0
[16] RSQLite_0.9-4 tcltk_2.12.0 tools_2.12.0
[19] xtable_1.5-6
>
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