[BioC] New Lumi data fails to load via lumiR

Thomas Hampton thomas.h.hampton at dartmouth.edu
Thu Dec 16 14:32:50 CET 2010

Thanks Gilbert.

I updated R and lumi (see below), but I still get the dreaded result.

 > data <- lumiR("FinalReport.txt")
Please provide the annotation file or lumi annotation library!

 > sessionInfo()
R version 2.12.0 (2010-10-15)
Platform: i386-apple-darwin9.8.0/i386 (32-bit)

[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] lumi_2.2.0     Biobase_2.10.0

loaded via a namespace (and not attached):
  [1] affy_1.28.0           affyio_1.18.0         annotate_1.28.0
  [4] AnnotationDbi_1.12.0  DBI_0.2-5             grid_2.12.0
  [7] hdrcde_2.15           KernSmooth_2.23-4     lattice_0.19-13
[10] MASS_7.3-8            Matrix_0.999375-44    methylumi_1.6.1
[13] mgcv_1.6-2            nlme_3.1-97           preprocessCore_1.12.0
[16] RSQLite_0.9-4         tcltk_2.12.0          tools_2.12.0
[19] xtable_1.5-6

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