[BioC] R packages for position anotation?

Steve Lianoglou mailinglist.honeypot at gmail.com
Wed Dec 15 01:45:42 CET 2010

Hi Jinyang,

Don't forget to hit "reply all" when replying to bioconductor emails
so that all correspondence is on list and, therefore, helpful to other
people who might land in the same boat as you.

On Tue, Dec 14, 2010 at 4:45 PM, Jinyan Huang <jhuang.ceph at gmail.com> wrote:
> Hi Steve,
> Thanks. Now I know how to use subjectHits to check them.
> I want to check whether are they located in 5'UTR or 3'UTR or exon or
> intron or non-gene region. What I think I shoud check these positions
> using exonsBy, intronsByTranscript, fiveUTRsByTranscrip,
> threeUTRsByTranscript separately. If a position is not in the result
> of above, this position should be a non-gene region. Is it right?

Well, assuming your annotations are "perfect," what else could it be?


Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact

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