[BioC] R packages for position anotation?
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Wed Dec 15 01:45:42 CET 2010
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On Tue, Dec 14, 2010 at 4:45 PM, Jinyan Huang <jhuang.ceph at gmail.com> wrote:
> Hi Steve,
> Thanks. Now I know how to use subjectHits to check them.
> I want to check whether are they located in 5'UTR or 3'UTR or exon or
> intron or non-gene region. What I think I shoud check these positions
> using exonsBy, intronsByTranscript, fiveUTRsByTranscrip,
> threeUTRsByTranscript separately. If a position is not in the result
> of above, this position should be a non-gene region. Is it right?
Well, assuming your annotations are "perfect," what else could it be?
Graduate Student: Computational Systems Biology
| Memorial Sloan-Kettering Cancer Center
| Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact
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