[BioC] permutation

[Steve Lianoglou]

Hi Peevi,

Please keep all correspondence on the list as other people will be the
ones helping you with this.

Your response is below:

On Thu, Dec 2, 2010 at 2:46 PM, Peevi Ijkl <ipeevi at yahoo.com> wrote:
> hello steve
> this is wot i did so far..
> load the cel files..gcRMA..nonspecific filtering..then GeneSetCollection foe
> KEGG..constructed an incidence matrix..computed per gene test statistics
> using rowttest function..Compute the Z score for  each pathway..now i want
> to do permutation using library(Category) and list pathways with p value cut
> off  .05 .

But sorry .. I'm not really sure what you're trying to do, and can't
spend much time trying to.

I was hoping your exposition would provide more information that
others can use to help you with.

-steve

-- 
Steve Lianoglou
Graduate Student: Computational Systems Biology
 | Memorial Sloan-Kettering Cancer Center
 | Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact