[BioC] Using biomaRt for getting Go Terms

[Hans-Rudolf Hotz]

Hi

I don't quite understand what you mean by "a single GO term (high 
ranking)", but the following might get you started:


library(biomaRt)

entrez=c("314417")

rn = useDataset("rnorvegicus_gene_ensembl", mart=useMart("ensembl"))

getBM(attributes=c('entrezgene','go_biological_process_id'), 
filters='entrezgene', values=entrez, mart=rn)





Regards, Hans


On 12/28/2010 11:22 PM, chawla wrote:
> Hi
> how can I use biomaRt to get a single GO term (high ranking) for each
> gene (entrez rat IDs).
> Konika
>
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