[BioC] affy package and ST arrays

[cstrato]

Dear Michal,

For ST arrays you could use package "xps" which supports mas5() and 
mas5.calls(), however for ST arrays dabg.calls() are recommended.

Best regards
Christian
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C.h.r.i.s.t.i.a.n   S.t.r.a.t.o.w.a
V.i.e.n.n.a           A.u.s.t.r.i.a
e.m.a.i.l:        cstrato at aon.at
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On 12/14/10 5:52 AM, Michal Blazejczyk wrote:
> Dear list,
>
> I have a question.  I've noticed that The most recent Biocinductor
> version contains CDF packages for Affymetrix's ST arrays.
>
> As a result, functions such as rma() or just.rma() now work well with
> these arrays, which is great.
>
> However, many other normalization functions (e.g. gcrma(), mas5(),
> mas5calls.AffyBatch(), or justPlier()) are still throwing errors.
>
> Does anybody know if there are plans to make these other methods work
> with the CDF packages for ST arrays?
>
> Best regards,
>
> Michal Blazejczyk
> FlexArray Lead Developer
> McGill University and Genome Quebec Innovation Centre
> 514-398-4400 x09625
> http://genomequebec.mcgill.ca/FlexArray
>
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