[BioC] combineBeadLevelLists() in Bioconductor 2.8 beadarray

Alex Gutteridge alexg at ruggedtextile.com
Tue Dec 7 11:20:49 CET 2010


Older versions of beadarray have a combineBeadLevelList() for combining
bead level data lists read from two different Illumina chips into one list.
In the latest beadarray this seems to have been removed, but I can't find
anything in the documentation describing the correct way to do this with
the new beadLevelData class. Am I missing something obvious or is this no
longer supported?

> sessionInfo()
R version 2.12.0 (2010-10-15)
Platform: x86_64-unknown-linux-gnu (64-bit)

 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            

attached base packages:
[1] splines   stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] reshape_0.8.3          plyr_1.2.1             nlme_3.1-97           
 [4] lumiHumanAll.db_1.12.0 org.Hs.eg.db_2.4.6     RSQLite_0.9-3         
 [7] DBI_0.2-5              AnnotationDbi_1.12.0   lumi_2.2.0            
[10] limma_3.6.6            latticeExtra_0.6-14    RColorBrewer_1.0-2    
[13] lattice_0.19-13        contrast_0.13          Design_2.3-0          
[16] Hmisc_3.8-3            survival_2.36-1        Cairo_1.4-5           
[19] beadarray_2.0.2        Biobase_2.10.0        

loaded via a namespace (and not attached):
 [1] affy_1.28.0           affyio_1.18.0         annotate_1.28.0      
 [4] cluster_1.13.2        grid_2.12.0           hdrcde_2.14          
 [7] KernSmooth_2.23-4     MASS_7.3-8            Matrix_0.999375-44   
[10] methylumi_1.4.0       mgcv_1.7-1            preprocessCore_1.12.0
[13] tcltk_2.12.0          tools_2.12.0          xtable_1.5-6         

Alex Gutteridge

More information about the Bioconductor mailing list