[BioC] combineBeadLevelLists() in Bioconductor 2.8 beadarray
Alex Gutteridge
alexg at ruggedtextile.com
Tue Dec 7 11:20:49 CET 2010
Hi,
Older versions of beadarray have a combineBeadLevelList() for combining
bead level data lists read from two different Illumina chips into one list.
In the latest beadarray this seems to have been removed, but I can't find
anything in the documentation describing the correct way to do this with
the new beadLevelData class. Am I missing something obvious or is this no
longer supported?
> sessionInfo()
R version 2.12.0 (2010-10-15)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] splines stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] reshape_0.8.3 plyr_1.2.1 nlme_3.1-97
[4] lumiHumanAll.db_1.12.0 org.Hs.eg.db_2.4.6 RSQLite_0.9-3
[7] DBI_0.2-5 AnnotationDbi_1.12.0 lumi_2.2.0
[10] limma_3.6.6 latticeExtra_0.6-14 RColorBrewer_1.0-2
[13] lattice_0.19-13 contrast_0.13 Design_2.3-0
[16] Hmisc_3.8-3 survival_2.36-1 Cairo_1.4-5
[19] beadarray_2.0.2 Biobase_2.10.0
loaded via a namespace (and not attached):
[1] affy_1.28.0 affyio_1.18.0 annotate_1.28.0
[4] cluster_1.13.2 grid_2.12.0 hdrcde_2.14
[7] KernSmooth_2.23-4 MASS_7.3-8 Matrix_0.999375-44
[10] methylumi_1.4.0 mgcv_1.7-1 preprocessCore_1.12.0
[13] tcltk_2.12.0 tools_2.12.0 xtable_1.5-6
--
Alex Gutteridge
More information about the Bioconductor
mailing list