[BioC] New Lumi data fails to load via lumiR
Thomas Hampton
thomas.h.hampton at dartmouth.edu
Wed Dec 15 21:18:59 CET 2010
I just got a new 12 plex chip to look at. To my eye, the data
structure of the new file,
called FinalReport.txt looks just like the old 8 plex version, but the
old data loads
up fine while the new data has some issue, complaining:
Please provide the annotation file or lumi annotation library!
Any ideas?
Best,
Tom
> sessionInfo()
R version 2.10.1 (2009-12-14)
i386-apple-darwin8.11.1
locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] lumi_1.12.4 MASS_7.3-4 RSQLite_0.8-0
[4] DBI_0.2-5 preprocessCore_1.8.0 mgcv_1.6-1
[7] affy_1.24.2 annotate_1.24.0 AnnotationDbi_1.8.1
[10] Biobase_2.6.1
loaded via a namespace (and not attached):
[1] affyio_1.14.0 grid_2.10.1 lattice_0.17-26
Matrix_0.999375-33
[5] nlme_3.1-96 tools_2.10.1 xtable_1.5-6
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