[BioC] New Lumi data fails to load via lumiR

Thomas Hampton thomas.h.hampton at dartmouth.edu
Wed Dec 15 21:18:59 CET 2010

I just got a new 12 plex chip to look at. To my eye, the data  
structure of the new file,
called FinalReport.txt looks just like the old 8 plex version, but the  
old data loads
up fine while the new data has some issue, complaining:

Please provide the annotation file or lumi annotation library!

Any ideas?



 > sessionInfo()
R version 2.10.1 (2009-12-14)

[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] lumi_1.12.4          MASS_7.3-4           RSQLite_0.8-0
[4] DBI_0.2-5            preprocessCore_1.8.0 mgcv_1.6-1
[7] affy_1.24.2          annotate_1.24.0      AnnotationDbi_1.8.1
[10] Biobase_2.6.1

loaded via a namespace (and not attached):
[1] affyio_1.14.0      grid_2.10.1        lattice_0.17-26     
[5] nlme_3.1-96        tools_2.10.1       xtable_1.5-6

More information about the Bioconductor mailing list