[BioC] About package beadarray

[Mark Dunning]

Hi,

That function used to be in beadarray to implement the background
normalisation that occurs in Illumina's BeadStudio/GenomeStudio.
However, it has been shown in various studies to be inferior to other
methods. See the neqc (limma) or vst (lumi) alternatives available
through the normaliseIllumina function in beadarray.

Mark


On Fri, Dec 10, 2010 at 11:07 PM, Changhe Fu <fuchanghe at gmail.com> wrote:
> Hi, All
>
> In previous version of package beadarray, I can use the function
> backgroundNormalise(). But in new one, I cann't find it. Is it included in
> some other fuction of normalising?
>
> Thank you
>
> --
> Best,
> Changhe Fu
>
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>
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