June 2008 Archives by author

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Starting: Sun Jun 1 07:10:04 CEST 2008
Ending: Mon Jun 30 22:27:29 CEST 2008
Messages: 486

• [BioC] snpMatrix - Creating a 1-column snp.matrix by subsetting a larger snp.matrix   Vincent Carey 525-2265
• [BioC] affy won't load   Vincent Carey 525-2265
• [BioC] oligo and pd.genomewidesnp.6_0   Vincent Carey 525-2265
• [BioC] Importing data from GEOquery   Vincent Carey 525-2265
• [BioC] Importing data from GEOquery   Vincent Carey 525-2265
• [BioC] Installation Error with Bioconductor on R   A A
• [BioC] Installation Error with Bioconductor on R   A A
• [BioC] Working with Affymetrix Files   A A
• [BioC] to calculate the mutual information   Federico Abascal
• [BioC] Rcurl 0.8-1 update for bioconductor 2.7   Patrick Aboyoun
• [BioC] [R-SIG-Mac] affy won't load   Patrick Aboyoun
• [BioC] Updated BioC 2.2 Mac OS X binary packages soon to be released on bioconductor.org (was Re: [R-SIG-Mac] affy won't load)   Patrick Aboyoun
• [BioC] limma - complex design matrix / blocks / random effects   Naomi Altman
• [BioC] Limma design question (model interactions)   Naomi Altman
• [BioC] Gene expression analysis   Naomi Altman
• [BioC] using genomic DNA as universal reference   Naomi Altman
• [BioC] using genomic DNA as universal reference   Naomi Altman
• [BioC] Microarray analysis question   Naomi Altman
• [BioC] html "help"   Naomi Altman
• [BioC] html "help"   Naomi Altman
• [BioC] html "help"   Naomi Altman
• [BioC] Fwd: Re: html "help"   Naomi Altman
• [BioC] Normalization Recommendations- severe biological variation (from the digest)   Naomi Altman
• [BioC] missing probes from illuminaHumanv3ProbeID.db   Lynn Amon
• [BioC] lumiHumanAll.db, GOstats   Lynn Amon
• [BioC] flowCore - how to see the marker names?   Anne
• [BioC] genefilter (nsFilter function)   Anne
• [BioC] genefilter (nsFilter function)   Anne
• [BioC] Votre assurance vie sans frais   FLD Assurances
• [BioC] CGH-like workflow for Affymetrix SNP 500k   Henrik Bengtsson
• [BioC] Cel processing question   Henrik Bengtsson
• [BioC] Working with Affymetrix Files   Henrik Bengtsson
• [BioC] Pd info package affy 10K array   Henrik Bengtsson
• [BioC] Pd info package affy 10K array   Henrik Bengtsson
• [BioC] Agilent - importing and reading problems   Bernal-Mizrachi, Leon
• [BioC] how to import mas5 data into expresso (affy package)   Manisha Brahmachary
• [BioC] filter gene based on cv   Manisha Brahmachary
• [BioC] arabidopsis annotate mget problem   Siobhan Braybrook
• [BioC] Normalization Recommendations- severe biological variation   Siobhan A. Braybrook
• [BioC] Filtering gene list prior to statistical testing   Siobhan A. Braybrook
• [BioC] Find Affy probes within a particular region   Daniel Brewer
• [BioC] CGH-like workflow for Affymetrix SNP 500k   Daniel Brewer
• [BioC] R 2.7.1   Daniel Brewer
• [BioC] two-line labels in GO graphs   Brian D. Peyser, Ph.D.
• [BioC] GEO annotation   Marc Carlson
• [BioC] arabidopsis annotate mget problem   Marc Carlson
• [BioC] Converting between old and new annotation packages?   Marc Carlson
• [BioC] baseMapType support for "image" in AnnotationDbi?   Marc Carlson
• [BioC] KEGG2heatmap genesymbols as row names?   Celine Carret
• [BioC] Rgraphviz, R 2.7.0 and Windows XP   Tony Chiang
• [BioC] Rgraphviz, R 2.7.0 and Windows XP   Tony Chiang
• [BioC] Rgraphviz, R 2.7.0 and Windows XP   Tony Chiang
• [BioC] Rgraphviz, R 2.7.0 and Windows XP   Tony Chiang
• [BioC] Database of plastic surgerons and 30 more specialties   Alphonse Coffman
• [BioC] Rgraphviz loading problem   Diego F. Cortes
• [BioC] Suggestions on Agilent gene expression data   Mark Cowley
• [BioC] How to calculate the values lige GeneSpring from the raw intensities (Agilent)   Mark Cowley
• [BioC] limma_analysis result   Mark Cowley
• [BioC] limma_analysis result   Mark Cowley
• [BioC] Cutoff to use for IQR filtering in genefilter   Mark Cowley
• [BioC] Cutoff to use for IQR filtering in genefilter   Mark Cowley
• [BioC] Cutoff to use for IQR filtering in genefilter   Mark Cowley
• [BioC] Working with Affymetrix Files   Mark Cowley
• [BioC] Filtering gene list prior to statistical testing   Mark Cowley
• [BioC] Filtering gene list prior to statistical testing   Mark Cowley
• [BioC] row clustering in heatmap.2   Mark Cowley
• [BioC] limma_analysis result   Mark Cowley
• [BioC] .qcdef file   Mark Cowley
• [BioC] going from aroma.affymetrix to limma   Mark Cowley
• [BioC] Undesirable behavior of limma MArrayLM?   Mark Cowley
• [BioC] using the Limma package with matrix data   Mark Cowley
• [BioC] Your thoughts on Limma Array Weights?   Mark Cowley
• [BioC] Can not concatenate more than 129 data values in R on Linux   Gábor Csárdi
• [BioC] Mapping KEGG pathway to GO term ID for Illumina gene expression data   Sean Davis
• [BioC] GenBank RefSeq conversion   Sean Davis
• [BioC] Error using GEOquery   Sean Davis
• [BioC] Using limma with Agilent array data   Sean Davis
• [BioC] Using limma with Agilent array data   Sean Davis
• [BioC] Reading GTFs   Sean Davis
• [BioC] Gene Signature Score Prediction   Sean Davis
• [BioC] using genomic DNA as universal reference   Sean Davis
• [BioC] Question about Package EBarrays   Sean Davis
• [BioC] Question about Package EBarrays   Sean Davis
• [BioC] lumiHumanAll.db, GOstats   Sean Davis
• [BioC] Mapping annotation Data with GEO platform   Sean Davis
• [BioC] Suggestions on Agilent gene expression data   Sean Davis
• [BioC] Suggestions on Agilent gene expression data   Sean Davis
• [BioC] Beadarray readBeadSummaryData() problem   Sean Davis
• [BioC] Beadarray readBeadSummaryData() problem   Sean Davis
• [BioC] Beadarray readBeadSummaryData() problem   Sean Davis
• [BioC] lumiHumanAll.db, GOstats   Sean Davis
• [BioC] reading subset of celfile and print out histograms   Sean Davis
• [BioC] Find Affy probes within a particular region   Sean Davis
• [BioC] GEO annotation   Sean Davis
• [BioC] GO.db   Sean Davis
• [BioC] GO.db   Sean Davis
• [BioC] R 2.7.1   Sean Davis
• [BioC] GEO annotation   Sean Davis
• [BioC] Importing data from GEOquery   Sean Davis
• [BioC] Gene expression data normalization question---batch effect related   Sean Davis
• [BioC] gains and losses via mode shifting   Sean Davis
• [BioC] gains and losses via mode shifting   Sean Davis
• [BioC] gains and losses via mode shifting   Sean Davis
• [BioC] Agilent single color array   Sean Davis
• [BioC] Rgraphviz, R 2.7.0 and Windows XP   Jenny Drnevich
• [BioC] Rgraphviz, R 2.7.0 and Windows XP   Jenny Drnevich
• [BioC] Rgraphviz, R 2.7.0 and Windows XP   Jenny Drnevich
• [BioC] Rgraphviz, R 2.7.0 and Windows XP - SOLVED!   Jenny Drnevich
• [BioC] Rgraphviz, R 2.7.0 and Windows XP - SOLVED!   Jenny Drnevich
• [BioC] Rgraphviz, R 2.7.0 and Windows XP - SOLVED!   Jenny Drnevich
• [BioC] Rgraphviz, R 2.7.0 and Windows XP - SOLVED!   Jenny Drnevich
• [BioC] Rgraphviz, R 2.7.0 and Windows XP - SOLVED!   Jenny Drnevich
• [BioC] How to install Rgraphviz on Windows - REALLY!   Jenny Drnevich
• [BioC] Rgraphviz, R 2.7.0 and Windows XP - SOLVED! - SOLVED AGAIN!   Jenny Drnevich
• [BioC] Rgraphviz, R 2.7.0 and Windows XP - SOLVED!   Jenny Drnevich
• [BioC] genefilter (nsFilter function)   Jenny Drnevich
• [BioC] lumi annotation package   Pan Du
• [BioC] lumiHumanAll.db, Gostats   Pan Du
• [BioC] Change of default normalization method in lumiN ( lumi package )   Pan Du
• [BioC] to calculate the mutual information   Heidi Dvinge
• [BioC] affyio version update problem   Kim Evans
• [BioC] Post-doctoral researcher position available   Marco Fabbri
• [BioC] Hey sexy still here?   Karly Faith
• [BioC] hgu133a annotation and discontinued Entrez IDs   David Fermin
• [BioC] hgu133a annotation and discontinued Entrez IDs   David Fermin
• [BioC] hthgu133adim not found   Richard Finney
• [BioC] hthgu133a + gcrma = pms error   Richard Finney
• [BioC] Problem viewing vignettes : openPDF and pdfviewer and possible fix   Karl Forner
• [BioC] Problem viewing vignettes : openPDF and pdfviewer and possible fix   Karl Forner
• [BioC] Bioconductor Digest, Vol 64, Issue 30   French, Jef (NIH/NIEHS)
• [BioC] Bioconductor Digest, Vol 64, Issue 29   French, Jef (NIH/NIEHS)
• [BioC] GCRMA-induced correlations? LARGE Change in GCRMA expression values (REPEAT QUESTION)   Richard Friedman
• [BioC] heatmap.2 tiff output help please   IAIN GALLAGHER
• [BioC] heatmap.2 tiff output help please   IAIN GALLAGHER
• [BioC] Cel processing question   IAIN GALLAGHER
• [BioC] CDF properties   Balasubramanian Ganesan
• [BioC] CDF properties   Balasubramanian Ganesan
• [BioC] affycoretools vennSelect problem   Peadar Ó Gaora
• [BioC] affycoretools vennSelect problem   Peadar Ó Gaora
• [BioC] limma and single-dye (R) gpr   Paul Geeleher
• [BioC] Do my Limma results look "normal"?   Paul Geeleher
• [BioC] Do my Limma results look "normal"?   Paul Geeleher
• [BioC] Do my Limma results look "normal"?   Paul Geeleher
• [BioC] Rgraphviz, R 2.7.0 and Windows XP   Robert Gentleman
• [BioC] GOstats with yeast2   Robert Gentleman
• [BioC] GOstats with yeast2   Robert Gentleman
• [BioC] GOstats with yeast2   Robert Gentleman
• [BioC] Do my Limma results look "normal"?   Robert Gentleman
• [BioC] Do my Limma results look "normal"?   Robert Gentleman
• [BioC] oligo and pd.genomewidesnp.6_0   Robert Gentleman
• [BioC] genefilter (nsFilter function)   Robert Gentleman
• [BioC] Converting between old and new annotation packages?   Robert Gentleman
• [BioC] Asking again: AnnotationDbi and GOstats - feed probe names to hyperGTest?   Robert Gentleman
• [BioC] Filtering gene list prior to statistical testing   Robert Gentleman
• [BioC] kOverA(k, A=100, na.rm=TRUE)   Robert Gentleman
• [BioC] Converting between old and new annotation packages?   Jeff Gentry
• [BioC] Converting between old and new annotation packages?   Jeff Gentry
• [BioC] Converting between old and new annotation packages?   Jeff Gentry
• [BioC] GOstats with yeast2   Sebastien Gerega
• [BioC] GOstats with yeast2   Sebastien Gerega
• [BioC] GOstats with yeast2   Sebastien Gerega
• [BioC] Rgraphviz, R 2.7.0 and Windows XP - SOLVED!   Sebastien Gerega
• [BioC] Rgraphviz, R 2.7.0 and Windows XP - SOLVED!   Sebastien Gerega
• [BioC] Rgraphviz, R 2.7.0 and Windows XP - SOLVED! - SOLVED AGAIN!   Sebastien Gerega
• [BioC] R/BioC workshops in Southern California   Thomas Girke
• [BioC] 'Factorial Design' package question   Glazko, Galina
• [BioC] 'Factorial Design' package question   Glazko, Galina
• [BioC] karyogram   Michael Gormley
• [BioC] Pd info package affy 10K array   Michael Gormley
• [BioC] Pd info package affy 10K array   Michael Gormley
• [BioC] GO categories: how to extract a specific rank of the category-tree   Johannes Graumann
• [BioC] Asking again: AnnotationDbi and GOstats - feed probe names to hyperGTest?   Johannes Graumann
• [BioC] Job Opportunity: Statistical Microarray Data Analyst - Switzerland   Martin Grindrod
• [BioC] Filtering gene list prior to statistical testing   Thomas Hampton
• [BioC] Using simpleaffy hmap.eset with 2 color data?   Thomas Hampton
• [BioC] Suggestions on Agilent gene expression data   Kasper Daniel Hansen
• [BioC] Suggestions on Agilent gene expression data   Kasper Daniel Hansen
• [BioC] affy won't load   Kasper Daniel Hansen
• [BioC] affy won't load   Kasper Daniel Hansen
• [BioC] affy won't load   Kasper Daniel Hansen
• [BioC] affxparser & oligo, persistent memory fault   Kasper Daniel Hansen
• [BioC] affy won't load   Kasper Daniel Hansen
• [BioC] affy won't load   Kasper Daniel Hansen
• [BioC] [R-SIG-Mac] affy won't load   Kasper Daniel Hansen
• [BioC] Problem loading Affy   Kasper Daniel Hansen
• [BioC] Agilent single color array   Kasper Daniel Hansen
• [BioC] Agilent single color array   Kasper Daniel Hansen
• [BioC] Assigning values to environments - merging them?   Christos Hatzis
• [BioC] home based job   Mission Houses Hawii
• [BioC] Filtering gene list prior to statistical testing   Johan van Heerden
• [BioC] Filtering gene list prior to statistical testing   Johan van Heerden
• [BioC] Normalization Recommendations- severe biological variation (from the digest)   Nick Henriquez
• [BioC] affycoretools vennSelect problem   Nick Henriquez
• [BioC] (no subject)   Edward Hsi
• [BioC] limma wrongly reading data   Wolfgang Huber
• [BioC] using genomic DNA as universal reference   Wolfgang Huber
• [BioC] cellHTS2 error in writeReport   Wolfgang Huber
• [BioC] Error using normalize.AffyBatch.vsn()   Wolfgang Huber
• [BioC] Assigning values to environments - merging them?   Wolfgang Huber
• [BioC] About ArrayExpress MAGE-TAB tools   Wolfgang Huber
• [BioC] EBImage install problems   Wolfgang Huber
• [BioC] combineaffybatch and Subsscript out of bound   Wolfgang Huber
• [BioC] Normalized Intensities for 2-color arrays in LIMMA   Lin Huffman
• [BioC] Cutoff to use for IQR filtering in genefilter   Seungwoo Hwang
• [BioC] lumiHumanAll.db, GOstats   Al Ivens
• [BioC] lumiHumanAll.db, Gostats   Al Ivens
• [BioC] sigPathway on Agilent data   Srinivas Iyyer
• [BioC] KEGG2heatmap genesymbols as row names?   Saurin D. Jani
• [BioC] using genomic DNA as universal reference   Jianping Jin
• [BioC] using genomic DNA as universal reference   Jianping Jin
• [BioC] using genomic DNA as universal reference   Jianping Jin
• [BioC] using genomic DNA as universal reference   Jianping Jin
• [BioC] using genomic DNA as universal reference   Jianping Jin
• [BioC] GSEA GeneSetCollection   Johnstone, Alice
• [BioC] GSEA GeneSetCollection   Johnstone, Alice
• [BioC] GSEA GeneSetCollection for GO info from Illumina annotation package   Johnstone, Alice
• [BioC] row clustering in heatmap.2   Johnstone, Alice
• [BioC] row clustering in heatmap.2   Johnstone, Alice
• [BioC] Mapping annotation Data with GEO platform   Wan Kyu Kim
• [BioC] Importing data from GEOquery   Kini, Aditya M
• [BioC] Sweave & limma mystery   Matthias Kohl
• [BioC] Rgraphviz, R 2.7.0 and Windows XP   Kort, Eric
• [BioC] Can not concatenate more than 129 data values in R on Linux   JONG-MIN LEE
• [BioC] exon.pmcdf: not a valid package?   Essi Lahti
• [BioC] flowCore - how to see the marker names?   Nolwenn LeMeur
• [BioC] Your thoughts on Limma Array Weights?   Paul Leo
• [BioC] Undesirable behavior of limma MArrayLM?   Paul Leo
• [BioC] using the Limma package with matrix data   Paul Leo
• [BioC] Your thoughts on Limma Array Weights?   Paul Leo
• [BioC] Undesirable behavior of limma MArrayLM?   Paul Leo
• [BioC] Undesirable behavior of limma MArrayLM?   Paul Leo
• [BioC] Affymetrics and Nimblegen Comparison   Xiaoyun(Nicole) Li
• [BioC] Problems about list files on a FTP site   LiGang
• [BioC] About ArrayExpress MAGE-TAB tools   LiGang
• [BioC] Reading GTFs   Steve Lianoglou
• [BioC] Reading GTFs   Steve Lianoglou
• [BioC] affy won't load   Steve Lianoglou
• [BioC] makePDpackage affy drosophila tiling 1 array   Steve Lianoglou
• [BioC] affy won't load   Steve Lianoglou
• [BioC] Help with creating a figure   Steve Lianoglou
• [BioC] affy won't load   Steve Lianoglou
• [BioC] [R-SIG-Mac] affy won't load   Steve Lianoglou
• [BioC] Installation Error with Bioconductor on R   Steve Lianoglou
• [BioC] Rgraphviz, R 2.7.0 and Windows XP   Li Long
• [BioC] Rgraphviz, R 2.7.0 and Windows XP   Li Long
• [BioC] Problems building RBGL package   Li Long
• [BioC] Problems building RBGL package   Li Long
• [BioC] subset in XPS   Zhibin Lu
• [BioC] subset in XPS   Zhibin Lu
• [BioC] exon.pmcdf: not a valid package?   James MacDonald
• [BioC] CGH-like workflow for Affymetrix SNP 500k   James MacDonald
• [BioC] error retrieving normalized probe values from "pm" array   James MacDonald
• [BioC] How I can extract the information of Probe and Probesets location on the microarray   James W. MacDonald
• [BioC] affyio version update problem   James W. MacDonald
• [BioC] Assigning values to environments - merging them?   James W. MacDonald
• [BioC] Standard error in summarization ExpressionSets   James W. MacDonald
• [BioC] Limma time course analysis - defining comparisons   James W. MacDonald
• [BioC] Rgraphviz, R 2.7.0 and Windows XP - SOLVED!   James W. MacDonald
• [BioC] Rgraphviz, R 2.7.0 and Windows XP - SOLVED!   James W. MacDonald
• [BioC] Rgraphviz, R 2.7.0 and Windows XP - SOLVED!   James W. MacDonald
• [BioC] Rgraphviz, R 2.7.0 and Windows XP - SOLVED!   James W. MacDonald
• [BioC] Limma time course analysis - defining comparisons   James W. MacDonald
• [BioC] hgu133a annotation and discontinued Entrez IDs   James W. MacDonald
• [BioC] AffyBatch -> CEL File   James W. MacDonald
• [BioC] heatmap.2 tiff output help please   James W. MacDonald
• [BioC] how to import mas5 data into expresso (affy package)   James W. MacDonald
• [BioC] Find Affy probes within a particular region   James W. MacDonald
• [BioC] html "help"   James W. MacDonald
• [BioC] html "help"   James W. MacDonald
• [BioC] Using genefilter   James W. MacDonald
• [BioC] genefilter (nsFilter function)   James W. MacDonald
• [BioC] Fwd: Re: html "help"   James W. MacDonald
• [BioC] filter gene based on cv   James W. MacDonald
• [BioC] arabidopsis annotate mget problem   James W. MacDonald
• [BioC] Using genefilter   James W. MacDonald
• [BioC] Cel processing question   James W. MacDonald
• [BioC] affycoretools vennSelect problem   James W. MacDonald
• [BioC] nsFilter cutoff   James W. MacDonald
• [BioC] nsFilter cutoff   James W. MacDonald
• [BioC] affycoretools question   James W. MacDonald
• [BioC] hthgu133adim not found   James W. MacDonald
• [BioC] Working with Affymetrix Files   James W. MacDonald
• [BioC] affycoretools repost   James W. MacDonald
• [BioC] Filtering gene list prior to statistical testing   James W. MacDonald
• [BioC] affycoretools repost   James W. MacDonald
• [BioC] AffyBatch boxplot and histograms   James W. MacDonald
• [BioC] Pd info package affy 10K array   James W. MacDonald
• [BioC] Pd info package affy 10K array   James W. MacDonald
• [BioC] oligo and pd.genomewidesnp.6_0   Morten Mattingsdal
• [BioC] oligo and pd.genomewidesnp.6_0   Morten Mattingsdal
• [BioC] affxparser & oligo, persistent memory fault   Morten Mattingsdal
• [BioC] affxparser & oligo, persistent memory fault   Morten Mattingsdal
• [BioC] Working with Affymetrix Files   Matthew McCormack
• [BioC] a question about LIMMA   Erika Melissari
• [BioC] Jobs   Crispin Miller
• [BioC] EBImage install problems   Crispin Miller
• [BioC] Problem viewing vignettes : openPDF and pdfviewer and possible fix   Martin Morgan
• [BioC] Rgraphviz, R 2.7.0 and Windows XP   Martin Morgan
• [BioC] Problems about list files on a FTP site   Martin Morgan
• [BioC] 'Factorial Design' package question   Martin Morgan
• [BioC] Possible Bug in readExpressionSet   Martin Morgan
• [BioC] GSEA GeneSetCollection   Martin Morgan
• [BioC] GSEA GeneSetCollection for GO info from Illumina annotation package   Martin Morgan
• [BioC] analysis ChIP-seq data   Martin Morgan
• [BioC] analysis ChIP-seq data   Martin Morgan
• [BioC] Standard error in summarization ExpressionSets   Martin Morgan
• [BioC] namespace error with goProfiles package   Martin Morgan
• [BioC] Problems installing bioconductor   Martin Morgan
• [BioC] Find Affy probes within a particular region   Martin Morgan
• [BioC] Problems installing bioconductor   Martin Morgan
• [BioC] Problems building RBGL package   Rasmus Ory Nielsen
• [BioC] Problems building RBGL package   Rasmus Ory Nielsen
• [BioC] Problems building RBGL package   Rasmus Ory Nielsen
• [BioC] Problems building RBGL package   Rasmus Ory Nielsen
• [BioC] Problems building RBGL package   Rasmus Ory Nielsen
• [BioC] goTools package - extract genes   Anne Dirks Højfeldt / Region Nordjylland
• [BioC] unexpected change in number of exons from/on mouse exon arrays   Michal Okoniewski
• [BioC] gains and losses via mode shifting   Benjamin Otto
• [BioC] gains and losses via mode shifting   Benjamin Otto
• [BioC] cross study comparison of cell populations   Kauer Maximilian Otto
• [BioC] Sweave & limma mystery   Philipp Pagel
• [BioC] Sweave & limma mystery   Philipp Pagel
• [BioC] Sweave & limma mystery   Philipp Pagel
• [BioC] snpMatrix - Creating a 1-column snp.matrix by subsetting a larger snp.matrix   Richard Pearson
• [BioC] snpMatrix - Creating a 1-column snp.matrix by subsetting a larger snp.matrix   Richard Pearson
• [BioC] snpMatrix - Creating a 1-column snp.matrix by subsetting a larger snp.matrix   Richard Pearson
• [BioC] Standard error in summarization ExpressionSets   Richard Pearson
• [BioC] a question about LIMMA   Francois Pepin
• [BioC] a question about LIMMA   Francois Pepin
• [BioC] Suggestions on Agilent gene expression data   Francois Pepin
• [BioC] a question about LIMMA   Francois Pepin
• [BioC] limma_analysis result   Francois Pepin
• [BioC] Filtering gene list prior to statistical testing   Steve Piccolo
• [BioC] GO.db   Heike Pospisil
• [BioC] unexpected change in number of exons from/on mouse exon arrays   Wolfgang RAFFELSBERGER
• [BioC] Limma design question (model interactions)   Wolfgang Raffelsberger
• [BioC] Why makeoutput() function is not included in hopach 1.4.3 version   Suprabhath Reddy
• [BioC] baseMapType support for "image" in AnnotationDbi?   James F. Reid
• [BioC] affycoretools question   Louisa A Rispoli/AS/EXP/UTIA
• [BioC] affycoretools repost   Louisa A Rispoli/AS/EXP/UTIA
• [BioC] affycoretools repost   Louisa A Rispoli/AS/EXP/UTIA
• [BioC] Your thoughts on Limma Array Weights?   Matt Ritchie
• [BioC] going from aroma.affymetrix to limma   Roberts, Raymond
• [BioC] kOverA(k, A=100, na.rm=TRUE)   Roberts, Raymond
• [BioC] using the Limma package with matrix data   Mark Robinson
• [BioC] Important information (Discover The Ways That We Protect Your Online Access)   ©2008 HALIFAX SECURITY
• [BioC] Important information (Discover The Ways That We Protect Your Online Access)   ©2008 HALIFAX SECURITY
• [BioC] pd.hg18.60mer.expr_1.1.1 and Nimblegen data for oligo package in R   JEAN-YVES SGRO
• [BioC] PhD position available in Florence, Italy, for metabolomcs studies   Edoardo Saccenti
• [BioC] PhD position available in Florence, Italy, for metabolomcs studies   Edoardo Saccenti
• [BioC] namespace error with goProfiles package   Alex Sanchez
• [BioC] Limma user’s guide example data sets   Keith Satterley
• [BioC] error retrieving normalized probe values from "pm" array   Lana Schaffer
• [BioC] error retrieving normalized probe values from "pm" array   Lana Schaffer
• [BioC] error retrieving normalized probe values from "pm" array   Lana Schaffer
• [BioC] Importing sample annotation from ArrayExpress   Markus Schmidberger
• [BioC] Error using GEOquery   Markus Schmidberger
• [BioC] Error using normalize.AffyBatch.vsn()   Markus Schmidberger
• [BioC] AffyBatch -> CEL File   Markus Schmidberger
• [BioC] Subtracting batch effect with Limma   Paul Christoph Schröder
• [BioC] Digital Banking Alert   Royal Bank Of Scotland
• [BioC] using the Limma package with matrix data   Markus Seto
• [BioC] using the Limma package with matrix data   Markus Seto
• [BioC] lumiHumanAll.db, GOstats   Wei Shi
• [BioC] Problems installing bioconductor   Daniel Silberschmidt
• [BioC] Cutoff to use for IQR filtering in genefilter   Sim, Fraser
• [BioC] EBImage install problems   Oleg Sklyar
• [BioC] limma and marray data import problem   Gordon K Smyth
• [BioC] limma and marray data import problem   Gordon K Smyth
• [BioC] a question about LIMMA   Gordon K Smyth
• [BioC] limma and marray data import problem   Gordon K Smyth
• [BioC] Averaging irregular replicate spots in limma   Gordon K Smyth
• [BioC] Using limma with Agilent array data   Gordon K Smyth
• [BioC] limma and marray data import problem   Gordon K Smyth
• [BioC] limma, p values and missing data or weights 0   Gordon K Smyth
• [BioC] model.matrix question   Gordon K Smyth
• [BioC] Do my Limma results look "normal"?   Gordon K Smyth
• [BioC] Your thoughts on Limma Array Weights?   Gordon K Smyth
• [BioC] Undesirable behavior of limma MArrayLM?   Gordon K Smyth
• [BioC] Undesirable behavior of limma MArrayLM?   Gordon K Smyth
• [BioC] limma and single-dye (R) gpr   Ng Stanley
• [BioC] Problems installing cghFLasso   Ng Stanley
• [BioC] Affymetrics and Nimblegen Comparison   Tobias Straub
• [BioC] makePDpackage affy drosophila tiling 1 array   Tobias Straub
• [BioC] makePDpackage affy drosophila tiling 1 array   Tobias Straub
• [BioC] makePDpackage affy drosophila tiling 1 array   Tobias Straub
• [BioC] namespace error with goProfiles package   Straubhaar, Juerg
• [BioC] limma and marray data import problem   Piotr Stępniak
• [BioC] limma wrongly reading data   Piotr Stępniak
• [BioC] limma and marray data import problem   Piotr Stępniak
• [BioC] limma wrongly reading data   Piotr Stępniak
• [BioC] limma and marray data import problem   Piotr Stępniak
• [BioC] limma and marray data import problem   Piotr Stępniak
• [BioC] limma and marray data import problem   Piotr Stępniak
• [BioC] limma and marray data import problem   Piotr Stępniak
• [BioC] Rgraphviz, R 2.7.0 and Windows XP   Myroslav Sypa
• [BioC] Gene Pre-filtering   Talloen, Willem [PRDBE]
• [BioC] analysis ChIP-seq data   Bogdan Tanasa
• [BioC] cellHTS2 error in writeReport   Steve Taylor
• [BioC] cellHTS2 error in writeReport   Steve Taylor
• [BioC] oneChannelGUI and hugene10stv1cdf   Steve Taylor
• [BioC] Using limma with Agilent array data   Anh Tran
• [BioC] Using limma with Agilent array data   Anh Tran
• [BioC] R/S course in *** New York City *** July 28-29 by XLSolutions Corp   Sue Turner
• [BioC] [R-SIG-Mac] affy won't load   Simon Urbanek
• [BioC] [R-SIG-Mac] affy won't load   Simon Urbanek
• [BioC] Problem loading Affy   Luc Vallieres
• [BioC] Problem with oneChannelGUI   Luc Vallieres
• [BioC] Help with creating a figure   Artur Veloso
• [BioC] LIMMA_Agilent   Abhilash Venu
• [BioC] limma_analysis result   Abhilash Venu
• [BioC] limma_analysis result   Abhilash Venu
• [BioC] limma_analysis result   Abhilash Venu
• [BioC] limma_analysis result   Abhilash Venu
• [BioC] Audlt Ecpiilxt: hot sluts 4 your nuts 13B8{%HEX}   Veronica Vernon
• [BioC] Standard error in summarization ExpressionSets   Rodrigo Santamaría Vicente
• [BioC] Measuring Goodness of a Matrix (Gene Expression Profiles)   Gundala Viswanath
• [BioC] Limma user’s guide example data sets   Wang, Jixin
• [BioC] Pfam mappings for A.thaliana   Samuel Wuest
• [BioC] limma - complex design matrix / blocks / random effects   Yannick Wurm
• [BioC] Rcurl 0.8-1 update for bioconductor 2.7   Bob Xiong
• [BioC] Rcurl 0.8-1 update for bioconductor 2.7   Bob Xiong
• [BioC] GEO annotation   Roumyana Yordanova
• [BioC] GEO annotation   Roumyana Yordanova
• [BioC] Assigning values to environments - merging them?   Helen Zhou
• [BioC] Assigning values to environments - merging them?   Helen Zhou
• [BioC] Limma time course analysis - defining comparisons   Helen Zhou
• [BioC] Limma time course analysis - defining comparisons   Helen Zhou
• [BioC] Limma time course analysis - defining comparisons   Helen Zhou
• [BioC] Limma time course analysis - defining comparisons   Helen Zhou
• [BioC] Rgraphviz, R 2.7.0 and Windows XP - SOLVED!   John Barrett [jzb]
• [BioC] PI/senior computational biologist in Ireland   aedin
• [BioC] CDF properties   lgautier at altern.org
• [BioC] How to calculate the values lige GeneSpring from the raw intensities (Agilent)   olszewski at atlas-biolabs.de
• [BioC] About ArrayExpress MAGE-TAB tools   audrey
• [BioC] Cel processing question   bmb at bmbolstad.com
• [BioC] using genomic DNA as universal reference   oliveros at cnb.csic.es
• [BioC] using genomic DNA as universal reference   oliveros at cnb.csic.es
• [BioC] Using genefilter   Nathan.Watson-Haigh at csiro.au
• [BioC] Using genefilter   Nathan.Watson-Haigh at csiro.au
• [BioC] Using genefilter   Nathan.Watson-Haigh at csiro.au
• [BioC] AffyBatch boxplot and histograms   Nathan.Watson-Haigh at csiro.au
• [BioC] affyQCReport Border Elements plot   Nathan.Watson-Haigh at csiro.au
• [BioC] AffyBatch boxplot and histograms   Nathan.Watson-Haigh at csiro.au
• [BioC] Working with Affymetrix Files   cstrato
• [BioC] subset in XPS   cstrato
• [BioC] subset in XPS   cstrato
• [BioC] model.matrix question   Dennis.Burian at faa.gov
• [BioC] Gene Pre-filtering: My Two Shekels   aoron at fhcrc.org
• [BioC] LIMMA - Intensity normalization methods   ninoochka at free.fr
• [BioC] How I can extract the information of Probe and Probesets location on the microarray   meiyin gao
• [BioC] karyogram   J.Oosting at lumc.nl
• [BioC] gains and losses via mode shifting   J.Oosting at lumc.nl
• [BioC] reading subset of celfile and print out histograms   das23 at njit.edu
• [BioC] nsFilter cutoff   james perkins
• [BioC] nsFilter cutoff   james perkins
• [BioC] nsFilter cutoff   james perkins
• [BioC] oneChannelGUI and hugene10stv1cdf   rcaloger
• [BioC] affy won't load   jason smith
• [BioC] affy won't load   jason smith
• [BioC] affy won't load   jason smith
• [BioC] affy won't load   jason smith
• [BioC] affy won't load   jason smith
• [BioC] Mapping KEGG pathway to GO term ID for Illumina gene expression data   ss
• [BioC] Mapping KEGG pathway to GO term ID for Illumina gene expression data   ss
• [BioC] Gene Signature Score Prediction   ss
• [BioC] Question about Package EBarrays   ss
• [BioC] Suggestions on Agilent gene expression data   ss
• [BioC] Suggestions on Agilent gene expression data   ss
• [BioC] Beadarray readBeadSummaryData() problem   ss
• [BioC] Beadarray readBeadSummaryData() problem   ss
• [BioC] Beadarray readBeadSummaryData() problem   ss
• [BioC] Beadarray readBeadSummaryData() problem   ss
• [BioC] Suggestions on Agilent gene expression data   ss
• [BioC] Suggestions on Agilent gene expression data   ss
• [BioC] Suggestions on Agilent gene expression data   ss
• [BioC] Gene expression data normalization question---batch effect related   ss
• [BioC] affy won't load   khansen at stat.Berkeley.EDU
• [BioC] Sweave & limma mystery   friedrich.leisch at stat.uni-muenchen.de
• [BioC] hgu133a annotation and discontinued Entrez IDs   anna freni sterrantino
• [BioC] beadarray time course exp and cont.matrix inversion   rich at thevillas.eclipse.co.uk
• [BioC] .qcdef file   ucbtagi at ucl.ac.uk
• [BioC] Error in gcrma.engine2 under R 2.7   ucbtagi at ucl.ac.uk
• [BioC] combineaffybatch and Subsscript out of bound   gregory voisin
• [BioC] to calculate the mutual information   jiabao xu
• [BioC] limma, p values and missing data or weights 0   sergiba at yahoo.com

Last message date: Mon Jun 30 22:27:29 CEST 2008
Archived on: Mon Jun 30 22:28:07 CEST 2008

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