[BioC] oligo and pd.genomewidesnp.6_0

[Vincent Carey 525-2265]

your hard disk may not be full but your temp space seems to be full.
perhaps you need to reset the path where R writes temporary files --
check the administrator's manual

---
Vince Carey, PhD
Assoc. Prof Med (Biostatistics)
Harvard Medical School
Channing Laboratory - ph 6175252265 fa 6177311541
181 Longwood Ave Boston MA 02115 USA
stvjc at channing.harvard.edu

On Tue, 17 Jun 2008, Morten Mattingsdal wrote:

> Hi,
>
> Ive just intstalled a fresh version of R 2.7.0 and want to run CRLMM on
> ~780 Affymetrix chips.
> When installing the subsequent platform design "pd.genomewidesnp.6_0" I
> get the following errors:
>
> R CMD INSTALL pd.genomewidesnp.6_0.4.2.tar.gz
> tar: pd.genomewidesnp.6/inst/extdata/pd.genomewidesnp.6.sqlite: Wrote
> only 1024 of 10240 bytes
> tar: Skipping to next header
> tar: Archive contains obsolescent base-64 headers
> tar: pd.genomewidesnp.6/inst/UnitTests: Cannot mkdir: No space left on
> device
> tar: pd.genomewidesnp.6/inst/UnitTests/crlmm_test.R: Cannot open: No
> such file or directory
> tar: pd.genomewidesnp.6/inst/UnitTests/runfile.sh: Cannot open: No such
> file or directory
> tar: pd.genomewidesnp.6/inst/UnitTests/Makefile: Cannot open: No such
> file or directory
> tar: pd.genomewidesnp.6/inst/UnitTests/checkTables_test.R: Cannot open:
> No such file or directory
> tar: pd.genomewidesnp.6/inst/UnitTests/runalltests.R: Cannot open: No
> such file or directory
> tar: pd.genomewidesnp.6/inst/UnitTests/runall.sh: Cannot open: No such
> file or directory
> tar: pd.genomewidesnp.6/R: Cannot mkdir: No space left on device
> tar: pd.genomewidesnp.6/R/all.R: Cannot open: No such file or directory
> tar: Error exit delayed from previous errors
> Fatal error: cannot mkdir R_TempDir
> * Installing to library ''
> ERROR: cannot write to or create directory '
>
> My harddisk is not full, so I wounder if this version
> pd.genomewidesnp.6_0 is broken. (pd.genomewidesnp.6_0.4.2.tar.gz)
> morten
>
>
>
>
>  > sessionInfo()
> R version 2.7.0 (2008-04-22)
> x86_64-unknown-linux-gnu
>
> locale:
> LC_CTYPE=en_US;LC_NUMERIC=C;LC_TIME=en_US;LC_COLLATE=en_US;LC_MONETARY=C;LC_MESSAGES=en_US;LC_PAPER=en_US;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US;LC_IDENTIFICATION=C
>
> attached base packages:
> [1] splines   tools     stats     graphics  grDevices utils     datasets
> [8] methods   base
>
> other attached packages:
> [1] oligo_1.4.0          oligoClasses_1.2.0   affxparser_1.12.2
> [4] AnnotationDbi_1.2.1  preprocessCore_1.2.0 RSQLite_0.6-9
> [7] DBI_0.2-4
>
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