[BioC] GO.db

[Sean Davis]

On Fri, Jun 20, 2008 at 7:42 AM, Heike Pospisil
<pospisil at zbh.uni-hamburg.de> wrote:
> Dear Bioconductors,
>
> I am going to use GO annotation libraries. Unfortunately, I did not succed in
> loading the package GO.db. I have got the following error message:
>
> Error in checkDBSCHEMA(dbconn, "GO_DB") :
>  invalid DB schema version (found 0.9, expected 1.0)
> Error : .onLoad failed in 'loadNamespace' for 'GO.db'
> Error: package/namespace load failed for 'GO.db'
>
> Does someone know which package is needed or what is going wrong with my
> libraries? The sessionInfo is given at the end of this email.

I would suggest using biocLite() to do the installation and then try again.

Sean

> #################
> sessionInfo()
> R version 2.7.0 (2008-04-22)
> i686-pc-linux-gnu
>
> locale:
> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
>
> attached base packages:
> [1] tools     stats     graphics  grDevices utils     datasets  methods
> [8] base
>
> other attached packages:
> [1] AnnotationDbi_1.2.2 RSQLite_0.6-9       DBI_0.2-4
> [4] Biobase_2.0.1
>
> --
> Dr. Heike Pospisil      | pospisil at zbh.uni-hamburg.de
> University of Hamburg   | Center for Bioinformatics
> Bundesstrasse 43        | 20146 Hamburg, Germany
> phone:+49-40-42838-7303 | fax: +49-40-42838-7312
>
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