[BioC] Rcurl 0.8-1 update for bioconductor 2.7

[Bob Xiong]

Patrick,

You were right about the firewall issue. I'm now all set. Thanks. I'm
propagating this email in case someone else might have encountered the
same problem and could benefit from your pointer.

Bob

-----Original Message-----
From: Patrick Aboyoun [mailto:paboyoun at fhcrc.org] 
Sent: Tuesday, June 24, 2008 1:02 PM
To: Bob Xiong
Cc: bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] Rcurl 0.8-1 update for bioconductor 2.7

Bob,
I am not sure what caused the download issue you experienced. Sometimes 
there are some "hidden" firewall issues that may have prevented you from

downloading the Windows binary package. I just checked on my computer 
and was able to grab RCurl from the bioconductor website.

 > source("http://bioconductor.org/biocLite.R")
 > biocLite("RCurl")
Running biocinstall version 2.2.9 with R version 2.7.0
Your version of R requires version 2.2 of BioConductor.
Warning in install.packages(pkgs = pkgs, repos = repos, dependencies = 
dependencies,  :
  argument 'lib' is missing: using 
'C:\Users\patrick\Documents/R/win-library/2.7'
trying URL 
'http://bioconductor.org/packages/2.2/extra/bin/windows/contrib/2.7/RCur
l_0.9-3.zip'
Content type 'application/zip' length 1329482 bytes (1.3 Mb)
opened URL
downloaded 1.3 Mb

package 'RCurl' successfully unpacked and MD5 sums checked

The downloaded packages are in
 
C:\Users\patrick\AppData\Local\Temp\RtmplphLQ6\downloaded_packages
updating HTML package descriptions
 > library(RCurl)
 > sessionInfo()
R version 2.7.0 (2008-04-22)
i386-pc-mingw32

locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United 
States.1252;LC_MONETARY=English_United 
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base    

other attached packages:
[1] RCurl_0.9-3

loaded via a namespace (and not attached):
[1] tools_2.7.0


If you are still having problems, could you send me more information 
(offline if necessary) and maybe we can pin down what the issue is?


Patrick



Bob Xiong wrote:
> I tried biocLite("RCurl") but got the following error msg.
>
>  
>
>   
>> biocLite("RCurl")
>>     
>
> Running biocinstall version 2.2.9 with R version 2.7.0 
>
> Your version of R requires version 2.2 of BioConductor.
>
> trying URL
>
'http://bioconductor.org/packages/2.2/extra/bin/windows/contrib/2.7/RCur
> l_0.9-3.zip'
>
> Error in download.file(url, destfile, method, mode = "wb", ...) : 
>
>   cannot open URL
>
'http://bioconductor.org/packages/2.2/extra/bin/windows/contrib/2.7/RCur
> l_0.9-3.zip'
>
> In addition: Warning message:
>
> In download.file(url, destfile, method, mode = "wb", ...) :
>
>   cannot open: HTTP status was '0 (nil)'
>
> Warning in download.packages(p0, destdir = tmpd, available =
available,
> :
>
>   download of package 'RCurl' failed
>
>  
>
> Patrick, could you take a look?
>
>  
>
> Thanks,
>
>  
>
> Bob Xiong, Ph.D.
>
> Tandem Labs
>
> www.tandemlabs.com <http://www.tandemlabs.com> 
>
>  
>
>  
>
>
> 	[[alternative HTML version deleted]]
>
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