[BioC] Importing data from GEOquery

Kini, Aditya M kiniadit at Grinnell.EDU
Wed Jun 25 21:42:04 CEST 2008


Hi,

I am repeatedly getting this error message when I try to import a file from GEO. Here is the code:

> gsm.1 <- getGEO("GSM3612")
trying URL 'http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?targ=self&acc=GSM3612&form=text&view=full'
Content type 'geo/text' length unknown
opened URL
downloaded 1.5 Mb

File stored at: 
C:\Users\Aditya\AppData\Local\Temp\Rtmp5ZePB5/GSM3612.soft
Error in scan(file, what, nmax, sep, dec, quote, skip, nlines, na.strings,  : 
  scan() expected 'a real', got '!sample_table_end'
> gsm.1
Error: object "gsm.1" not found

Please let me know what the problem is. 

Thanks,
Adi



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