[BioC] row clustering in heatmap.2

Johnstone, Alice Alice.Johnstone at esr.cri.nz
Wed Jun 25 04:49:16 CEST 2008


Hi
Im having a hard time trying to understand the clustering functions used
with heatmap.2.  I have expression data, treatment vs control for which
I have created a heatmap for (default arguments).  But I want to reorder
the rows so that the row with the highest expression in my treatment is
at the top, the 2nd having the 2nd highest expression..etc.. down to the
last row having the lowest expression (compared to the control).
Any suggestions on how I can go about this would be very much
appreciated!
Thank you

Alice Johnstone

PhD Student
Institute of Environmental Science and Research Ltd
Kenepuru Science Centre
34 Kenepuru Drive
PO Box 50-348
Porirua
New Zealand

Tel:  + 64 4 914-0717
Fax: + 64 4 914-0770


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