February 2005 Archives by date

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Starting: Tue Feb 1 02:07:20 CEST 2005
Ending: Mon Feb 28 16:55:44 CEST 2005
Messages: 389

• [BioC] [BioC}: GO Tools   Anthony Bosco
• [BioC] NCBI LocusLink -> Entrez Gene transition   Seth Falcon
• [BioC] Limma, decideTests   Gordon Smyth
• [BioC] memory problem   Dr_Gyorffy_Balazs
• [BioC] limma - FDR adjusted "p-values"   Gordon K Smyth
• [BioC] limma - FDR adjusted "p-values"   Sean Davis
• [BioC] limma - FDR adjusted "p-values"   michael watson (IAH-C)
• [BioC] GOHyperG   Katleen De Preter
• [BioC] GOHyperG   Robert Gentleman
• [BioC] [BioC}: GO Tools   Paquet, Agnes
• [BioC] Question about ATH1 array   Fangxin Hong
• [BioC] limma - FDR adjusted "p-values"   Naomi Altman
• [BioC] Question about ATH1 array   Wolfgang Huber
• [BioC] Question about ATH1 array   Rhonda DeCook
• [BioC] Question about ATH1 array   Fangxin Hong
• [BioC] memory problem   Wolfgang Huber
• [BioC] New package GeneR   Antoine Lucas
• [BioC] GOstats   Maria Persico
• [BioC] GOstats   Sean Davis
• [BioC] What do the results mean?   Naomi Altman
• [BioC] mas5call select genes   Naomi Altman
• [BioC] poster permission   morten mattingsdal
• [BioC] Problem with GOHyperG   Bosotti, Roberta [Nervianoms]
• [BioC] non-symmetric heatmap colors   Arne.Muller at sanofi-aventis.com
• [BioC] non-symmetric heatmap colors   Sean Davis
• [BioC] paeg1aprobe   Lana Schaffer
• [BioC] Globaltest   Jiuzhou song
• [BioC] trouble with yeastann function in AnnBuilder   Jacob Michaelson
• [BioC] non-symmetric heatmap colors   Wolfgang Huber
• [BioC] non-symmetric heatmap colors   Arne.Muller at sanofi-aventis.com
• [BioC] Globaltest   Oosting, J. (PATH)
• [BioC] non-symmetric heatmap colors   Sean Davis
• [BioC] trouble with yeastann function in AnnBuilder   John Zhang
• [BioC] what linux version for Affy chip analysis   Dr_Gyorffy_Balazs
• [BioC] Technical replicates   Shruti Subramaniam
• [BioC] what linux version for Affy chip analysis   Douglas Bates
• [BioC] Gene Selection   Heike Pospisil
• [BioC] Run r codes in shell?   Lin Tang
• [BioC] Run r codes in shell?   Gustavo H. Esteves
• [BioC] new package: rankProduct   Wittner, Ben
• [BioC] trouble with yeastann function in AnnBuilder   James W. MacDonald
• [BioC] Run r codes in shell?   James W. MacDonald
• [BioC] Run r codes in shell?   Malard, Joel M
• [BioC] Could you help me   Liao, Guiping
• [BioC] Questions for Affy package on hist() and boxplot()   Luo, Wen
• [BioC] Questions for Affy package on hist() and boxplot()   James W. MacDonald
• [BioC] LIMMA: How do I get the standard deviation?   Sebastian Thieme
• [BioC] Questions for Affy package on hist() and boxplot()   Luo, Wen
• [BioC] LIMMA: How do I get the standard deviation?   Marcus Davy
• [BioC] paeg1aprobe   Seth Falcon
• [BioC] poster permission   Seth Falcon
• [BioC] Problem with GOHyperG   Seth Falcon
• [BioC] Questions for Affy package on hist() and boxplot()   James W. MacDonald
• [BioC] Getting GO terms and other annotation for Golub data set   michael watson (IAH-C)
• [BioC] Getting GO terms and other annotation for Golub data set   Oosting, J. (PATH)
• [BioC] Getting GO terms and other annotation for Golub data set   Sean Davis
• [BioC] how to check reference quality?   Silvano Piazza
• [BioC] Gene Selection   Naomi Altman
• [BioC] Gene Selection   Heike Pospisil
• [BioC] Could you help me   James W. MacDonald
• [BioC] Gene Selection   Arne.Muller at sanofi-aventis.com
• [BioC] Could you help me   Holger Schwender
• [BioC] LIMMA: How do I get the standard deviation?   Gordon Smyth
• [BioC] ratLLMappings_1.5.1.   Wolfgang Huber
• [BioC] Question regarding the Heatmap function   Dongxiao Zhu
• [BioC] Internationalization and localization of R   Prof Brian Ripley
• [BioC] quality analysis   claudio.is at libero.it
• [BioC] quality analysis   Robert Gentleman
• [BioC] yeastCC installs ok, but won't load; R2.0.1   JDCGo at aol.com
• [BioC] yeastCC installs ok, but won't load; R2.0.1   JDCGo at aol.com
• [BioC] yeastCC installs ok, but won't load; R2.0.1   James W. MacDonald
• Fix [BioC] yeastCC installs ok, but won't load; R2.0.1   JDCGo at aol.com
• Fix [BioC] yeastCC installs ok, but won't load; R2.0.1   Robert Gentleman
• Fix [BioC] yeastCC installs ok, but won't load; R2.0.1   James MacDonald
• [BioC] annaffy: YEAST vs. Affy YEAST_2 annotation   Jacob Michaelson
• [BioC] Gene Selection   Heike Pospisil
• [BioC] RMA normalization, which samples should be normalized together   Dipl.-Ing. Johannes Rainer
• [BioC] Gene Selection   Arne.Muller at sanofi-aventis.com
• [BioC] Getting GO terms and other annotation for Golub data set   michael watson (IAH-C)
• [BioC] AnnBuilder URL error.   Giulio Di Giovanni
• [BioC] Getting GO terms and other annotation for Golub data set   Sean Davis
• [BioC] Getting GO terms and other annotation for Golub data set   michael watson (IAH-C)
• [BioC] RMA normalization, which samples should be normalized together   Arne.Muller at sanofi-aventis.com
• [BioC] Getting GO terms and other annotation for Golub data set   Sean Davis
• [BioC] AnnBuilder URL error.   John Zhang
• [BioC] AnnBuilder URL error.   James W. MacDonald
• [BioC] Affy: chromosomal localization with expression value for of gene lists   Dr_Gyorffy_Balazs
• [BioC] annaffy: YEAST vs. Affy YEAST_2 annotation   James W. MacDonald
• [BioC] RMA normalization,which samples should be normalized together   Dipl.-Ing. Johannes Rainer
• [BioC] Affy: chromosomal localization with expression value for of gene lists   Florence Combes
• [BioC] Affy: chromosomal localization with expression value for of gene lists   James W. MacDonald
• [BioC] Affy: chromosomal localization with expression value for of gene lists   John Zhang
• [BioC] RMA normalization,which samples should be normalized together   Naomi Altman
• [BioC] Affy: chromosomal localization with expression value for of gene lists   Furge, Kyle
• [BioC] Colours in degradation plot   kfbargad at lg.ehu.es
• [BioC] annaffy: YEAST vs. Affy YEAST_2 annotation   Colin A. Smith
• [BioC] AnnBuilder URL error. Thanks.   Giulio Di Giovanni
• [BioC] Colours in degradation plot   James W. MacDonald
• [BioC] RMA normalization,which samples should be normalized together   Naomi Altman
• [BioC] annotation for ath1121501 (?)   Rhonda DeCook
• [BioC] Question about sequence data results   Hrishikesh Deshmukh
• [BioC] MAS5+32, PLIER+16 alorithms reported in affycomp   Ariel Chernomoretz
• [BioC] Treatment of Duplicate spots   Pita
• [BioC] affylmGUI error when normalizing   Seth Falcon
• [BioC] affylmGUI error when normalizing   Aaron Hamilton
• [BioC] questions of using Limma: should I include all the samples?   Wu, Xiwei
• [BioC] R CMD check error   Fangxin Hong
• [BioC] questions of using Limma: should I include all the samples?   Fangxin Hong
• [BioC] Treatment of Duplicate spots   Matthew Ritchie
• [BioC] R CMD check error   Seth Falcon
• [BioC] RMA normalization,which samples should be normalized together   Dipl.-Ing. Johannes Rainer
• [BioC] factorial analysis of affy arrays   Jakub Orzechowski
• [BioC] factorial analysis of affy arrays   Arne.Muller at sanofi-aventis.com
• [BioC] Error in rankProduct package   Wittner, Ben
• [BioC] LIMMA: analysis of direct design....   Jakob Hedegaard
• [BioC] AnnBuilder error ?   Giulio Di Giovanni
• [BioC] AnnBuilder error ?   John Zhang
• [BioC] AnnBuilder error ?   James W. MacDonald
• [BioC] Bioconductor website relocated   Seth Falcon
• [BioC] Bioconductor website relocated   stefano iacus
• [BioC] questions of using Limma: should I include all thesam ples?   Wu, Xiwei
• [BioC] affylmGUI - feedback, questions   Steffen Moeller
• [BioC] questions of using Limma: should I include allthesam ples?   Fangxin Hong
• [BioC] factorial analysis of affy arrays   Robert Gentleman
• [BioC] Affy Difference calls possible?   Soumyaroop Bhattacharya
• [BioC] .pdf files of GOstats documents   Shi, Tao
• [BioC] Batch effects and linear models   Malard, Joel M
• [BioC] .pdf files of GOstats documents   Seth Falcon
• [BioC] .pdf files of GOstats documents   michael watson (IAH-C)
• [BioC] questions of using Limma: should I include allthesam p les?   Wu, Xiwei
• [BioC] .pdf files of GOstats documents   Shi, Tao
• [BioC] annotation packages and goTools   Straubhaar, Juerg
• [BioC] Expression values of a gene   Srinivas Iyyer
• [BioC] Limma toptable output using write.table and column names   Ken Termiso
• [BioC] .pdf files of GOstats documents   Steffen Moeller
• [BioC] Batch effects and linear models   Fangxin Hong
• [BioC] .pdf files of GOstats documents   Wolfgang Huber
• [BioC] .pdf files of GOstats documents   michael watson (IAH-C)
• [BioC] Limma toptable output using write.table and column names   Julia Engelmann
• [BioC] annotation packages and goTools   John Zhang
• [BioC] Microarray data analysis for experiments using amplified RNA   Swati Ranade
• [BioC] About goTools and multiple chips   Radu Dobrin
• [BioC] Microarray data analysis for experiments using amplified RNA   Robert Gentleman
• [BioC] Treatment of Duplicate spots   Pita
• [BioC] RE: Sequence data and filtering results   Justin Borevitz
• [BioC] Limma toptable output using write.table and column names   Ken Termiso
• [BioC] problem using arrayQuality package   Georg Otto
• [BioC] cdf environment for bovine Affy chips   Margaret Gardiner-Garden
• [BioC] cdf environment for bovine Affy chips   Margaret Gardiner-Garden
• [BioC] Please help: AffylmGUI errors   Aaron Hamilton
• [BioC] cdf environment for bovine Affy chips   James W. MacDonald
• [BioC] CRANrepository is not a repository or some http problem   Malard, Joel M
• [BioC] About goTools and multiple chips   Paquet, Agnes
• [BioC] CRANrepository is not a repository or some http problem   Kasper Daniel Hansen
• [BioC] problem using arrayQuality package   Paquet, Agnes
• [BioC] CRANrepository is not a repository or some http problem   Seth Falcon
• [BioC] Please help: AffylmGUI errors   Seth Falcon
• [BioC] LIMMA: analysis of direct design....   Gordon Smyth
• [BioC] Treatment of Duplicate spots   Matthew Ritchie
• [BioC] Installing Bioconductor in a multi-platform R installation   Atro Tossavainen
• [BioC] affylmGUI error when normalizing   James Wettenhall
• [BioC] Microarray data analysis for experiments using amplifiedRNA   Claire Wilson
• [BioC] Converting annotate lists to a matrix   michael watson (IAH-C)
• [BioC] Converting annotate lists to a matrix   Wolfgang Huber
• [BioC] Converting annotate lists to a matrix   John Zhang
• [BioC] Converting annotate lists to a matrix   michael watson (IAH-C)
• [BioC] Installing Bioconductor in a multi-platform R installation   Seth Falcon
• [BioC] Mismatch Sequences   Hrishikesh Deshmukh
• [BioC] Mismatch Sequences   Zhijin Wu
• [BioC] Re: Limma: M value in toptable   Hua Weng
• [BioC] Please help: AffylmGUI errors (more detail)   Aaron Hamilton
• [BioC] Installing genefilter   Monnie McGee
• [BioC] problem using arrayQuality package   Georg Otto
• [BioC] CRANrepository back online   Seth Falcon
• [BioC] CRANrepository is not a repository or some http problem   Seth Falcon
• [BioC] Re: Limma: M value in toptable   Gordon Smyth
• [BioC] masking probe pairs in RMA   Lana Schaffer
• [BioC] Trouble in building cdf package   Wenqiong Chen
• [BioC] Trouble in building cdf package   James W. MacDonald
• [BioC] using MSK files with "mas"   Lana Schaffer
• [BioC] problem using arrayQuality package   Paquet, Agnes
• [BioC] Gene filtering   Heike Pospisil
• [BioC] GCRMA error   Dion Whitehead
• [BioC] GCRMA error   Dion Whitehead
• [BioC] Gene filtering   Adaikalavan Ramasamy
• [BioC] Re: Bioconductor Digest, Vol 24, Issue 11   Dr_Gyorffy_Balazs
• [BioC] GCRMA error   Zhijin Wu
• [BioC] Gene filtering   Heike Pospisil
• [BioC] Gene filtering   Robert Gentleman
• [BioC] (stupid) question about wilcoxon test and finding interesting genes   Dipl.-Ing. Johannes Rainer
• [BioC] Gene filtering   James W. MacDonald
• [BioC] (stupid) question about wilcoxon test and finding interesting genes   James W. MacDonald
• [BioC] Installing genefilter   Kasper Daniel Hansen
• [BioC] affylmGUI and annotate problem?   Anand C.Patel
• [BioC] affylmGUI and annotate problem?   James W. MacDonald
• [BioC] Installing genefilter   McGee, Monnie
• [BioC] Gene filtering   Adaikalavan Ramasamy
• [BioC] Gene filtering   Adaikalavan Ramasamy
• [BioC] Installing genefilter   Robert Gentleman
• [BioC] ramachandran   Robinson, Peter
• [BioC] exprSet object help   Marcelo Luiz de Laia
• [BioC] questions on results from mt.maxT (multtest)   Wolfgang Huber
• [BioC] questions on results from mt.maxT (multtest)   Straubhaar, Juerg
• [BioC] (stupid) question about wilcoxon test and finding interesting genes   Naomi Altman
• [BioC] questions on results from mt.maxT (multtest)   Adaikalavan Ramasamy
• [BioC] Installing Bioconductor in a multi-platform R installation   Atro Tossavainen
• [BioC] (stupid) question about wilcoxon test and finding interesting genes   Dipl.-Ing. Johannes Rainer
• [BioC] makeGOGraph error   Wolfgang Huber
• [BioC] makeGOGraph error   Bosotti, Roberta [Nervianoms]
• [BioC] MEETING: 17 May - Genes, populations & disease: genomic, proteomic & metabonomic approaches in epidemiology   Gilthorpe, Mark S
• [BioC] makeGOGraph error   Robert Gentleman
• [BioC] Gene filtering   Heike Pospisil
• [BioC] makeGOGraph error   Bosotti, Roberta [Nervianoms]
• [BioC] Contrast matrix in limma   Ingunn Berget
• [BioC] Heatmap/plot: Label by colours   Heike Pospisil
• [BioC] Installing Bioconductor in a multi-platform R installation   Seth Falcon
• [BioC] questions on results from mt.maxT (multtest)   Straubhaar, Juerg
• [BioC] questions on results from mt.maxT (multtest)   Wolfgang Huber
• [BioC] questions on results from mt.maxT (multtest)   Straubhaar, Juerg
• [BioC] questions on results from mt.maxT (multtest)   P.D. Moerland
• [BioC] questions on results from mt.maxT (multtest)   Adaikalavan Ramasamy
• [BioC] BioC and Fasta file   Hrishikesh Deshmukh
• [BioC] BioC and Fasta file   Antoine Lucas
• [BioC] get the vector of leaf's names from object "dendrogram" generated by cut()   Na, Ren
• [BioC] Problem with Expresso and RMA   Monnie McGee
• [BioC] getting closer on YEAST 2.0 annotation...   Jacob Michaelson
• [BioC] Re: using MSK files with "mas"   t-kawai at hhc.eisai.co.jp
• [BioC] [COURSE REMINDER] Computational and Statistical Aspects of Microarray Analysis   stefano iacus
• [BioC] makeGOGraph error   Bosotti, Roberta [Nervianoms]
• [BioC] Contrast matrix in limma   Gordon K Smyth
• [BioC] Contrast matrix in limma   Ingunn Berget
• [BioC] getting closer on YEAST 2.0 annotation...   John Zhang
• [BioC] PLIER   Crispin Miller
• [BioC] getting closer on YEAST 2.0 annotation...   Jacob Michaelson
• [BioC] Problem with Expresso and RMA   Vincent Carey 525-2265
• [BioC] getting closer on YEAST 2.0 annotation...   John Zhang
• [BioC] Problem with Expresso and RMA   McGee, Monnie
• [BioC] limma paired samples using block   Dick Beyer
• [BioC] (stupid) question about wilcoxon test and finding interesting genes   Naomi Altman
• [BioC] LIMMA - timecourse and direct comparison exp. design   Federico Scossa
• [BioC] RNA degradation assay   claudio.is at libero.it
• [BioC] RNA degradation assay   Naomi Altman
• [BioC] hclust vs dendrogram   Stefanie Scheid
• [BioC] plier package   Ariel Chernomoretz
• [BioC] Problem with Expresso and RMA   Robert Gentleman
• [BioC] plier package - addendum   Ariel Chernomoretz
• [BioC] set geneNames in exprSet object   Marcelo Luiz de Laia
• [BioC] set geneNames in exprSet object   James W. MacDonald
• [BioC] set geneNames in exprSet object   Seth Falcon
• [BioC] plier package - addendum   Seth Falcon
• [BioC] 1lq   Kasper Daniel Hansen
• [BioC] [limma] How do I do to obtain DE genes in Time Course Experiments?   Marcelo Luiz de Laia
• [BioC] normalizeQuantiles : log2 or not??   Marcus Davy
• [BioC] [limma] How do I do to obtain DE genes in Time CourseExperiments?   Marcus Davy
• [BioC] normalizeQuantiles : log2 or not??   Marcelo Luiz de Laia
• [BioC] PLIER Error   Anthony Bosco
• [BioC] sanity check: recipe for p-value from RMA expression estimates   Reiner Schulz
• [BioC] 1lq   Wolfgang Huber
• [BioC] plier package   Crispin Miller
• [BioC] PLIER Error   Crispin Miller
• [BioC] [limma] How do I do to obtain DE genes in Time CourseExperiments?   Marcelo Luiz de Laia
• [BioC] RNA degradation... or not?   Ken Simpson
• [BioC] normalizeQuantiles : log2 or not??   Marcelo Luiz de Laia
• [BioC] multiple testing with 54000 genes   Dipl.-Ing. Johannes Rainer
• [BioC] RNA degradation... or not?   James W. MacDonald
• [BioC] multiple testing with 54000 genes   James W. MacDonald
• [BioC] Problem with Expresso and RMA   linda_yue at agilent.com
• [BioC] multiple testing with 54000 genes   Sachin Mathur
• [BioC] multiple testing with 54000 genes   Sachin Mathur
• [BioC] multiple testing with 54000 genes   Dipl.-Ing. Johannes Rainer
• [BioC] multiple testing with 54000 genes   Dipl.-Ing. Johannes Rainer
• [BioC] Problem with Expresso and RMA   Linda Yue
• [BioC] [Limma] Using P value or B statistics for cutoff?   Wu, Xiwei
• [BioC] error in installing Bioconductor development packages   Tom Shi
• [BioC] CRANrepository is not a repository or some http problem   Malard, Joel M
• [BioC] Re:PLIER wierd Mvs A   Anthony Bosco
• [BioC] multiple testing with 54000 genes   Dipl.-Ing. Johannes Rainer
• [BioC] justRMA => logarithmic data ?   Heike Pospisil
• [BioC] justRMA => logarithmic data ?   Arne.Muller at sanofi-aventis.com
• [BioC] justRMA => logarithmic data ?   Heike Pospisil
• [BioC] limma: duplicateCorrelation error   Georg Otto
• [BioC] getBioC install problem in Fedora   Dr_Gyorffy_Balazs
• [BioC] getBioC install problem in Fedora   Jeff Gentry
• [BioC] getBioC install problem in Fedora   Robert Gentleman
• [BioC] error in installing Bioconductor development packages   Robert Gentleman
• [BioC] Automated blasting of short nucleotide sequences against each other   Ken Termiso
• [BioC] Automated blasting of short nucleotide sequences against each other   Sean Davis
• [BioC] error in installing Bioconductor development packages   Seth Falcon
• [BioC] Re: RMAGEML Package   Dykema, Karl
• [BioC] Re: RMAGEML Package   Seth Falcon
• [BioC] Automated blasting of short nucleotide sequences against each other   Ghai, Rohit
• [BioC] Pm problem   Wenqiong Chen
• [BioC] Automated blasting of short nucleotide sequences againsteach other   David Lapointe
• [BioC] limma: duplicateCorrelation error   Gordon K Smyth
• [BioC] (no subject)   sdurinck at ebi.ac.uk
• [BioC] Pm problem   Seth Falcon
• [BioC] Analyzing arrays with no replicates   McGee, Monnie
• [BioC] Analyzing arrays with no replicates   Sean Davis
• [BioC] Analyzing arrays with no replicates   Naomi Altman
• [BioC] Analyzing arrays with no replicates   James W. MacDonald
• [BioC] Error in normalisation routines   Dion Whitehead
• [BioC] limma and paired data   SKALKO at clinic.ub.es
• [BioC] Error in normalisation routines   Robert Gentleman
• [BioC] normalization   Paul Mack
• [BioC] rw2001 RMA in GeneSpring "Error in sigToEnv"   Liu, Xin
• [BioC] Ruuid installation problems   Raffaele Calogero
• [BioC] Ruuid installation problems   Robert Gentleman
• [BioC] Error with library hgu95av2   Claudia Döring
• [BioC] Query: How to install earlier version of Bioconductor on R.1.9.1   sachin Kumar
• [BioC] Query: How to install earlier version of Bioconductor on R.1.9.1   Robert Gentleman
• [BioC] Ruuid installation problems   Raffaele Calogero
• [BioC] normalization question (conceptual)   Paul Mack
• [BioC] normalization question (conceptual)   Naomi Altman
• [BioC] normalization question (conceptual)   James W. MacDonald
• [BioC] Ruuid installation problems   Seth Falcon
• [BioC] Error with library hgu95av2   Seth Falcon
• [BioC] Ruuid installation problems   Kasper Daniel Hansen
• [BioC] LIMMA - timecourse and direct comparison exp. design   Federico Scossa
• [BioC] Memory error in Mac OS X Aqua GUI v1.01 with cluster package functions   Betty Gilbert
• [BioC] LPE   Harry Hurd
• [BioC] affy to normalize others single chanels...   Marcelo Luiz de Laia
• [BioC] limma and paired data   Gordon K Smyth
• [BioC] LIMMA - timecourse and direct comparison exp. design   Gordon K Smyth
• [BioC] greenred.colors() in geneplotter   michael watson (IAH-C)
• [BioC] limma and paired data   SKALKO at clinic.ub.es
• [BioC] greenred.colors() in geneplotter   James W. MacDonald
• [BioC] greenred.colors() in geneplotter   michael watson (IAH-C)
• [BioC] limma_1.8.21 was: LIMMA - timecourse and direct comparison exp. design   Pita
• [BioC] Memory error in Mac OS X Aqua GUI v1.01 with cluster package functions   James W. MacDonald
• [BioC] sanity check: p-value from RMA expression estimates   Reiner Schulz
• [BioC] Limma Contrast Statistics for Affy CEL files,   Saurin Jani
• [BioC] questions about agilent 44k array   xuejun qin
• [BioC] FYI from apple employee RE: [R] Memory error in Mac OS X Aqua GUI v1.01 with cluster   Betty Gilbert
• [BioC] comparison of Affymetrix MGU74v2 and MOE430 chips   Clive Glover
• [BioC] comparison of Affymetrix MGU74v2 and MOE430 chips   Soumyaroop Bhattacharya
• [BioC] GoHyperG   Katleen De Preter
• [BioC] GoHyperG   Robert Gentleman
• [BioC] GoHyperG   Katleen De Preter
• [BioC] comparison of Affymetrix MGU74v2 and MOE430 chips   Clive Glover
• [BioC] Anyone have a GO slim list for Affy HG-U133A or HG-U133Av2?   Ken Termiso
• [BioC] Anyone have a GO slim list for Affy HG-U133A or HG-U133Av2?   Sean Davis
• [BioC] Anyone have a GO slim list for Affy HG-U133A or HG-U133Av2?   Ken Termiso
• [BioC] from KEGG Gene ID to Gene Symbol or Name   Saurin Jani
• [BioC] Limma. How can I deal with two sets with different printing.   M PEREZ
• [BioC] Installing R   Elizabeth Brooke-Powell
• [BioC] Memory error in Mac OS X Aqua GUI v1.01 with cluster package functions   Jenny Bryan
• [BioC] Limma Contrast Statistics for Affy CEL files,   Gordon Smyth
• [BioC] rownames in topTable and posterior probability   Adaikalavan Ramasamy
• [BioC] FYI from apple employee RE: [R] Memory error in Mac OS X Aqua GUI v1.01 with cluster   stefano iacus
• [BioC] posterior values in topTable for limma   Adaikalavan Ramasamy
• [BioC] Anyone have a GO slim list for Affy HG-U133A or HG-U133Av2?   Aedin
• [BioC] Loding cel files as a batch in R   S Peri
• [BioC] Loding cel files as a batch in R   Sean Davis
• [BioC] something weird with read.maimages and .gpr files   Pita
• [BioC] Installing R   stefano iacus
• mean vs median of pixel values within spot mask wasRe: [BioC] something weird with read.maimages and .gpr files   Pita
• [BioC] Limma. How can I deal with two sets with different printing.   Gordon K Smyth
• [BioC] selecting probe set from expression matrix   Srinivas Iyyer
• [BioC] selecting probe set from expression matrix   Rhonda DeCook
• [BioC] LIMMA - unconnected experiments   Federico Scossa
• [BioC] Problems with hgu133plus2   Vitalina Komashko
• [BioC] Problems with hgu133plus2   Kasper Daniel Hansen
• [BioC] selecting probe set from expression matrix   James MacDonald
• [BioC] rownames in topTable and posterior probability   Gordon K Smyth
• [BioC] mean vs median of pixel values within spot mask   Gordon K Smyth
• [BioC] LIMMA - unconnected experiments   Gordon K Smyth
• [BioC] ratios in SAM analysis   Flora Fan
• [BioC] combineAffyBatch problem   Flora Fan
• [BioC] Hu6800 Annotation and Target sequences   S Peri
• [BioC] Hu6800 Annotation and Target sequences   James W. MacDonald
• [BioC] mean vs median of pixel values within spot mask   Gordon K Smyth
• [BioC] Problems with hgu133plus2   Vitalina Komashko
• [BioC] Problems with hgu133plus2   James W. MacDonald
• [BioC] combineAffyBatch problem   Wolfgang Huber
• [BioC] combineAffyBatch problem   Flora Fan
• [BioC] combineAffyBatch problem   Wolfgang Huber
• [BioC] Comparision of expression values from 4 different studies   Srinivas Iyyer
• [BioC] Comparision of expression values from 4 different studies   Rafael Irizarry
• [BioC] block design and how it handles missing values in Limma   xiaocui zhu
• [BioC] Problems with hgu133plus2   Vitalina Komashko
• [BioC] rownames in topTable and posterior probability   Adaikalavan Ramasamy
• [BioC] rownames in topTable and posterior probability   Gordon Smyth
• [BioC] differing versions of limma   Adaikalavan Ramasamy
• [BioC] differing versions of limma   Sean Davis
• [BioC] differing versions of limma   Robert Gentleman
• [BioC] installing packages in bioconductor   Qizheng Sheng
• [BioC] plot, drawing character string as ticks, not indizes   Dipl.-Ing. Johannes Rainer
• [BioC] help needed for aCGH package   Alberto Goldoni
• [BioC] plot, drawing character string as ticks, not indizes   Zhijin Wu

Last message date: Mon Feb 28 16:55:44 CEST 2005
Archived on: Mon Feb 28 18:04:56 CEST 2005

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