[BioC] Gene filtering

[Robert Gentleman]

Hi,
  You really need to give us more details,
"my xxx did not work", does not let anyone give you good advice.
As someone just said on the R help list,
  "Imagine that the rest of us are not sitting looking at your computer  
screen" :-)

Specific errors/warnings, and the commands issued (cut and paste, not  
what you think you did, but what you did)

Robert

On Feb 11, 2005, at 5:32 AM, Heike Pospisil wrote:

> Hello Adaikalavan
>
>> I think justRMA() uses nearly all the memory you have access to, so it
>> it only able to handle small computations afterwards. What I would
>> suggest is try saving the exprSet and exit. Then start from a fresh R
>> session and do your analysis from that. See below.
>>
>
> Thanks for your suggestion. Saving and loading the exprSet work and  
> help. But, unfortunately, my filter function do not work.
>
> ff1<-ttest(data,.001,na.rm=TRUE)
> ff2<-filterfun(ff1)
> wh2<-genefilter(exprs(data), ff2)
>
> No idea :-(
>
> Best wishes.
> Heike
>
> --  
> Dr. Heike Pospisil
> Center for Bioinformatics, University of Hamburg
> Bundesstrasse 43, 20146 Hamburg, Germany
> phone: +49-40-42838-7303 fax: +49-40-42838-7312
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
>
>
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| Robert Gentleman              phone: (206) 667-7700                    
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| Head, Program in Computational Biology   fax:  (206) 667-1319   |
| Division of Public Health Sciences       office: M2-B865               
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| Fred Hutchinson Cancer Research Center                                 
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| email: rgentlem at fhcrc.org                                              
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