[BioC] getting closer on YEAST 2.0 annotation...

[John Zhang]

>The following files were created:
>YEAST2ALIAS.rda
>YEAST2CHR.rda
>YEAST2CHRLOC.rda
>YEAST2DESCRIPTION.rda
>YEAST2GENENAME.rda
>YEAST2GO.rda
>YEAST2ORF.rda
>YEAST2PMID.rda
>YEAST2PMID2PROBE.rda

Looks like KEGG was not available. If the above environments are enough for you, 
you may write a DESCRIPTION file under YEAST2 and then install the package.

>
>>
>>>
>>> I know it's there, it just doesn't think the directory is a valid
>>> package (dir includes R, man, data subdirectories).  I also tired
>>> installing via the Mac OS X GUI, which also failed.
>>>
>>> There was also an XML file made, which seems to contain all the proper
>>> annotation.  Is there any way to create an annotation package from 
>>> this
>>> XML file?  Why even make the XML file? (Just curious).
>>
>> You can set makeXML = FALSE to turn it off.
>
>I know I can turn it off -- I just wanted to know what the purpose 
>would be (within BioC) of making an XML version.

For people who may want to use the annotation data in other platforms.

>
>>
>>>
>>> Thanks in advance,
>>>
>>> Jake Michaelson
>>>
>>> _______________________________________________
>>> Bioconductor mailing list
>>> Bioconductor at stat.math.ethz.ch
>>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>>
>> Jianhua Zhang
>> Department of Medical Oncology
>> Dana-Farber Cancer Institute
>> 44 Binney Street
>> Boston, MA 02115-6084
>>
>
>Jake Michaelson
>
>	[[alternative text/enriched version deleted]]
>
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Jianhua Zhang
Department of Medical Oncology
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084