[BioC] set geneNames in exprSet object
Marcelo Luiz de Laia
mlaia at fcav.unesp.br
Wed Feb 16 21:18:53 CET 2005
Dear all,
I read a data set with the command:
> Tol.eSet <- read.exprSet("Tolerante_b.txt") and the result is wonderful!
> Tol.eSet
Expression Set (exprSet) with
2516 genes
18 samples
phenoData object with 1 variables and 18 cases
varLabels
sample: arbitrary numbering
Now, I try to set the geneNames slot. I try these commands:
> Tol.geneNames <- read.table("geneNames.txt",header = TRUE,colClasses
= "character")
> Tol.eSet$geneNames<-Tol.geneNames
> Tol.eSet$geneNames
NULL
> geneNames(Tol.eSet)<-Tol.geneNames
Error in "rownames<-"(x, value) : length of dimnames [1] not equal to
array extent
The column that contain geneNames is named Genes in txt archive.
Anyone could help me?
thanks
Marcelo
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