Fix [BioC] yeastCC installs ok, but won't load; R2.0.1
JDCGo at aol.com
JDCGo at aol.com
Sun Feb 6 07:04:18 CET 2005
Received a suggestion from Jim MacDonald to look for and extract this zip file, and then try to load.
C:\Program Files\R\rw2001\library\yeastCC\data\Rdata.zip
Extracted this zip file which created yeastCC.RData, which is a file of type "R Workspace". Then dragged yeastCC.Rdata onto the RGui to do the load as shown here:
> load("C:/Program Files/R/rw2001/library/yeastCC/data/Rdata/yeastCC.RData")
Although still get same error:
> library(yeastCC)
Error in open.connection(con, "rb") : unable to open connection
In addition: Warning message:
cannot open compressed file `C:/PROGRA~1/R/rw2001/library/yeastCC/data/yeastCC.RData'
Error in library(yeastCC) : .First.lib failed for 'yeastCC'
>
and don't see yeastCC in packages:
> (.packages())
[1] "multtest" "genefilter" "survival" "splines" "affy" "reposTools" "annotate"
[8] "Biobase" "tools" "methods" "stats" "graphics" "grDevices" "utils"
[15] "datasets" "base"
>
and get warning with data command:
> data(yeastCC)
Warning message:
Data set 'yeastCC' not found in: data(yeastCC)
>
exprs works:
> dat <- exprs(yeastCC)
> dim(dat)
[1] 6178 77
>
and see data:
> dat[1:5,1:5]
cln3.1 cln3.2 clb2.2 clb2.1 alpha0
YAL001C 0.15 NA -0.22 0.07 -0.15
YAL002W -0.07 -0.76 -0.12 -0.25 -0.11
YAL003W -1.22 -0.27 -0.10 0.23 -0.14
YAL004W -0.09 1.20 0.16 -0.14 -0.02
YAL005C -0.60 1.01 0.24 0.65 -0.05
>
Thanks,
John Garner
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