[BioC] combineAffyBatch problem

[Flora Fan]

Hi Wolfgang,

Thank you for the reply. Actually I tried one more time, and it did
finished. I have 59 affy chips and a very big memory, it took a few hours
to finish. Previously, my connection got reset before I finish my
calculations. So BTW, how can I run combine function at background on a
SGI machine?

Thanks,
Flora

On Sun, 27 Feb 2005, Wolfgang Huber wrote:

>
> Hi Flora,
>
> "never" obviously can't be true, since to say that you would have to
> wait for an infinitely long time. So how long did you actually wait? Did
> you notice that your machine started swapping? How much memory do you
> have and how big are your AffyBatches?
>
>    Bw
>    Wolfgang
>
>
> Flora Fan wrote:
> > Dear Robert, Wolfgang and Bioconductor people,
> >
> > I tried to use the combineAffyBatch function, by typing
> >
> >
> >>new<-combineAffyBatch(list(U133Adata, U133plus2data), c("hgu133aprobe",
> >
> > hgu133plusprobe"), newcdf="comb", verbose=TRUE)
> >
> > then it gave me:
> >
> > package:hgu133acdf hgu133acdf
> > package:hgu133plus2cdf hgu133plus2cdf
> > 24828 unique probes in common
> >
> > But after that the prompt never shows up, what could go wrong?
> > Any suggestion would be appreciated.
> >
> > Flora
> >
> > _______________________________________________
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> > Bioconductor at stat.math.ethz.ch
> > https://stat.ethz.ch/mailman/listinfo/bioconductor
>
>
> --
> Best regards
>    Wolfgang
>
> -------------------------------------
> Wolfgang Huber
> European Bioinformatics Institute
> European Molecular Biology Laboratory
> Cambridge CB10 1SD
> England
> Phone: +44 1223 494642
> Fax:   +44 1223 494486
> Http:  www.ebi.ac.uk/huber
>
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