[BioC] combineAffyBatch problem

[Wolfgang Huber]

Hi Flora,

"never" obviously can't be true, since to say that you would have to 
wait for an infinitely long time. So how long did you actually wait? Did 
you notice that your machine started swapping? How much memory do you 
have and how big are your AffyBatches?

   Bw
   Wolfgang


Flora Fan wrote:
> Dear Robert, Wolfgang and Bioconductor people,
> 
> I tried to use the combineAffyBatch function, by typing
> 
> 
>>new<-combineAffyBatch(list(U133Adata, U133plus2data), c("hgu133aprobe",
> 
> hgu133plusprobe"), newcdf="comb", verbose=TRUE)
> 
> then it gave me:
> 
> package:hgu133acdf hgu133acdf
> package:hgu133plus2cdf hgu133plus2cdf
> 24828 unique probes in common
> 
> But after that the prompt never shows up, what could go wrong?
> Any suggestion would be appreciated.
> 
> Flora
> 
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-- 
Best regards
   Wolfgang

-------------------------------------
Wolfgang Huber
European Bioinformatics Institute
European Molecular Biology Laboratory
Cambridge CB10 1SD
England
Phone: +44 1223 494642
Fax:   +44 1223 494486
Http:  www.ebi.ac.uk/huber