Fix [BioC] yeastCC installs ok, but won't load; R2.0.1

[James MacDonald]

That's not what I suggested. After you unzip that file (leaving it in
the data directory), you should then access the package in the usual
way, which is to do:

library(yeastCC)

Jim



James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623
>>> <JDCGo at aol.com> 02/06/05 1:04 AM >>>
Received a suggestion from Jim MacDonald to look for and extract this
zip file, and then try to load.  

C:\Program Files\R\rw2001\library\yeastCC\data\Rdata.zip

Extracted this zip file which created yeastCC.RData, which is a file of
type "R Workspace".  Then dragged yeastCC.Rdata onto the RGui to do the
load as shown here:

> load("C:/Program
Files/R/rw2001/library/yeastCC/data/Rdata/yeastCC.RData")

Although still get same error:

> library(yeastCC)
Error in open.connection(con, "rb") : unable to open connection
In addition: Warning message:
cannot open compressed file
`C:/PROGRA~1/R/rw2001/library/yeastCC/data/yeastCC.RData'
Error in library(yeastCC) : .First.lib failed for 'yeastCC'
>

and don't see yeastCC in packages:

> (.packages())
[1] "multtest"   "genefilter" "survival"   "splines"    "affy"      
"reposTools" "annotate"  
[8] "Biobase"    "tools"      "methods"    "stats"      "graphics"  
"grDevices"  "utils"    
[15] "datasets"   "base"      
>

and get warning with data command:

> data(yeastCC)
Warning message:
Data set 'yeastCC' not found in: data(yeastCC)
>

exprs works:

> dat <- exprs(yeastCC)
> dim(dat)
[1] 6178   77
>

and see data:

> dat[1:5,1:5]
      cln3.1 cln3.2 clb2.2 clb2.1 alpha0
YAL001C   0.15     NA  -0.22   0.07  -0.15
YAL002W  -0.07  -0.76  -0.12  -0.25  -0.11
YAL003W  -1.22  -0.27  -0.10   0.23  -0.14
YAL004W  -0.09   1.20   0.16  -0.14  -0.02
YAL005C  -0.60   1.01   0.24   0.65  -0.05
>

Thanks,

John Garner

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