[BioC] Getting GO terms and other annotation for Golub data set

Sean Davis sdavis2 at mail.nih.gov
Mon Feb 7 14:05:27 CET 2005

On Feb 7, 2005, at 5:21 AM, michael watson ((IAH-C)) wrote:
> So now I have the GO and KEGG metaData packages, and I know how to 
> query
> them at a very low level.  My next step will be to write some code to
> take a group of affy identifiers, query these packages and see if they
> all seem to hit the same KEGG pathway, or have GO terms in common.  Has
> anyone done this before and put it in a nice package, or do I write it
> from scratch?

The GOstats package does this for GO.  You could use that directly for 
the GO stuff.  For the KEGG stuff, I think you would have to write 
something, but it shouldn't be too hard.  Also, there are now several 
websites that allow you to do this (not an R solution, but perhaps a 
good first-pass).


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