[BioC] .pdf files of GOstats documents
Steffen Moeller
steffen.moeller at med.uni-rostock.de
Wed Feb 9 02:30:47 CET 2005
I recently compiled 1.1.2 on Debian Linux and it seems all fine for me.
The following files I get
dpkg -c ../../gostats/r-bioconductor-gostats_1.1.2-1_all.deb|grep pdf
-rw-r--r-- root/root 23100 2005-02-08 19:45:58
./usr/lib/R/site-library/GOstats/doc/GOstats-tfGplot.pdf
-rw-r--r-- root/root 3569 2005-02-08 19:45:58
./usr/lib/R/site-library/GOstats/doc/GOstats-GO2LL.pdf
-rw-r--r-- root/root 20664 2005-02-08 19:45:58
./usr/lib/R/site-library/GOstats/doc/GOstats-GOg1.pdf
-rw-r--r-- root/root 21614 2005-02-08 19:45:58
./usr/lib/R/site-library/GOstats/doc/GOstats-GOxx.pdf
-rw-r--r-- root/root 3457 2005-02-08 19:45:58
./usr/lib/R/site-library/GOstats/doc/fig_histabsdiff.pdf
-rw-r--r-- root/root 34992 2005-02-08 19:45:58
./usr/lib/R/site-library/GOstats/doc/GOstats-pathPairs.pdf
-rw-r--r-- root/root 8471 2005-02-08 19:45:58
./usr/lib/R/site-library/GOstats/doc/GOstats-pathinNEG.pdf
-rw-r--r-- root/root 8841 2005-02-08 19:45:58
./usr/lib/R/site-library/GOstats/doc/GOstats-pathinB.pdf
-rw-r--r-- root/root 272551 2005-02-08 19:45:58
./usr/lib/R/site-library/GOstats/doc/GOstats.pdf
-rw-r--r-- root/root 80744 2005-02-08 19:45:58
./usr/lib/R/site-library/GOstats/doc/GOusage.pdf
-rw-r--r-- root/root 86928 2005-02-08 19:45:58
./usr/lib/R/site-library/GOstats/doc/GOvis-GOMF.pdf
-rw-r--r-- root/root 227770 2005-02-08 19:45:58
./usr/lib/R/site-library/GOstats/doc/GOvis-GOBP.pdf
-rw-r--r-- root/root 27424 2005-02-08 19:45:58
./usr/lib/R/site-library/GOstats/doc/GOvis-GOCC.pdf
-rw-r--r-- root/root 434896 2005-02-08 19:45:58
./usr/lib/R/site-library/GOstats/doc/GOvis.pdf
At least GOvis.pdf and GOstats.pdf are fine with xpdf.
$ dpkg -c r-bioconductor-gostats_1.1.2-1_all.deb|grep html
-rw-r--r-- root/root 5183 2005-02-08 19:45:58
./usr/lib/R/site-library/GOstats/doc/example.html
-rw-r--r-- root/root 386 2005-02-08 19:46:45
./usr/lib/R/site-library/GOstats/doc/index.html
drwxr-xr-x root/root 0 2005-02-08 19:46:38
./usr/lib/R/site-library/GOstats/html/
-rw-r--r-- root/root 4721 2005-02-08 19:46:29
./usr/lib/R/site-library/GOstats/html/00Index.html
-rw-r--r-- root/root 3390 2005-02-08 19:46:32
./usr/lib/R/site-library/GOstats/html/ALL.html
-rw-r--r-- root/root 4380 2005-02-08 19:46:33
./usr/lib/R/site-library/GOstats/html/GOHyperG.html
-rw-r--r-- root/root 1538 2005-02-08 19:46:33
./usr/lib/R/site-library/GOstats/html/GOLeaves.html
-rw-r--r-- root/root 1004 2005-02-08 19:46:33
./usr/lib/R/site-library/GOstats/html/GOstats-defunct.html
-rw-r--r-- root/root 1077 2005-02-08 19:46:33
./usr/lib/R/site-library/GOstats/html/Ndists.html
-rw-r--r-- root/root 2240 2005-02-08 19:46:34
./usr/lib/R/site-library/GOstats/html/compCorrGraph.html
-rw-r--r-- root/root 1938 2005-02-08 19:46:34
./usr/lib/R/site-library/GOstats/html/compGdist.html
-rw-r--r-- root/root 1982 2005-02-08 19:46:34
./usr/lib/R/site-library/GOstats/html/dropECode.html
-rw-r--r-- root/root 1414 2005-02-08 19:46:34
./usr/lib/R/site-library/GOstats/html/getEvidence.html
-rw-r--r-- root/root 2775 2005-02-08 19:46:35
./usr/lib/R/site-library/GOstats/html/getGOTerm.html
-rw-r--r-- root/root 1938 2005-02-08 19:46:35
./usr/lib/R/site-library/GOstats/html/getOntology.html
-rw-r--r-- root/root 1524 2005-02-08 19:46:35
./usr/lib/R/site-library/GOstats/html/hasGOannote.html
-rw-r--r-- root/root 1663 2005-02-08 19:46:36
./usr/lib/R/site-library/GOstats/html/idx2dimnames.html
-rw-r--r-- root/root 2213 2005-02-08 19:46:36
./usr/lib/R/site-library/GOstats/html/makeGOGraph.html
-rw-r--r-- root/root 1536 2005-02-08 19:46:36
./usr/lib/R/site-library/GOstats/html/notConn.html
-rw-r--r-- root/root 2047 2005-02-08 19:46:36
./usr/lib/R/site-library/GOstats/html/oneGOGraph.html
-rw-r--r-- root/root 3062 2005-02-08 19:46:37
./usr/lib/R/site-library/GOstats/html/shortestPath.html
-rw-r--r-- root/root 3443 2005-02-08 19:46:37
./usr/lib/R/site-library/GOstats/html/simLL.html
-rw-r--r-- root/root 3067 2005-02-08 19:46:38
./usr/lib/R/site-library/GOstats/html/triadCensus.html
Many greetings
Steffen
michael watson (IAH-C) wrote:
>I raised this a few days ago - the GOStats documentation is only partially there in my installation too. A bit of an html file, the start of a tex document etc
>
>
>-----Original Message-----
>From: bioconductor-bounces at stat.math.ethz.ch on behalf of Seth Falcon
>Sent: Tue 2/8/2005 9:34 PM
>To: bioconductor at stat.math.ethz.ch
>Cc:
>Subject: Re: [BioC] .pdf files of GOstats documents
>
>On Tue, Feb 08, 2005 at 10:08:53PM -0800, Wolfgang Huber wrote:
>
>
>>Hi Shi, Tao
>>
>>
>>
>>>After the installation of GOstats (1.1.1) library to R (2.0.1, windows2K),
>>>I don't see the .pdf vignettes in the GOstats/doc/ directory. I've been
>>>having trouble in converting the .Rnw files to .tex and to .pdf file. I
>>>would really appreciate if somebody can send me these .pdf files or tell
>>>me where to get them. Thank you,
>>>
>>>
>>>
>>http://www.bioconductor.org/
>> click on "vignettes",
>> click on the one you want.
>>
>>But normally the vignettes should come with the package - what went wrong?
>>
>>
>
>I'm not sure yet, but we will look into it. The vignettes should be
>included.
>
>+ seth
>
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