[BioC] annotation packages and goTools

[John Zhang]

>I would like to use goTools with a list of MOE430_2 probesets. It
>seems that a MOE430_2 annotation file is necessary for this to work. 

The correct name for the package is mouse4302. Just do:

>llibrary(reposTools)
>install.packages2("mouse4302")


>
>I tried this:
>
>>ontoCompare(namesList,probeType=c("moe430a","moe430b"),  plot=TRUE)
>[1] "Starting ontoCompare..."
>Error: value for "1419903_at" not found
>
>A MOE430_2 package doesn't exist. As far as I know the MOE430_2
>chip probes are the sum of the MOE430A and MOE430B chip probes. Can
>the MOE430A and -B annotation packages easily be merged to a MOE430_2
>annotation package or is this more complicated?
>
>Juerg Straubhaar
>Umass Med
>
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Jianhua Zhang
Department of Medical Oncology
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084