[BioC] Problems with hgu133plus2

[Vitalina Komashko]

Hello Kasper,
Thank you very much for your reply, it really worked. But now I can't access
information from the environments, for example:
> id<-ls(env=hgu133plus2ACCNUM)
Error in ls(env = hgu133plus2ACCNUM) : Object "hgu133plus2ACCNUM" not found
Probably I need to understand where ls(env=xxx) is looking  for .rda file. 
Thank you for your help
Best wishes, Vitalina.

On Fri Feb 25 22:09 , Kasper Daniel Hansen <k.hansen at biostat.ku.dk> sent:

>I have an idea (although I do not know why it is so): R tries to find 
>
>C:/PROGRA~1/R/rw2000/library/hgu133plus2/data/hgu133plus2QC.rda
>
>Inside the directory
>
>C:/PROGRA~1/R/rw2000/library/hgu133plus2/data/
>
>you will find a zip file (I think) and if you manually unzip it, and 
>place the .rda file in the data directory, you should be ok.
>
>We have seen similar things with other metadat packages under WIndows. I 
>have no idea why, but at least the fix is pretty simple.
>
>Kasper
>
>On Fri, Feb 25, 2005 at 07:24:41PM -0700, Vitalina Komashko wrote:
>> Hi everybody,
>> I'm trying to to install and make package hgu133plus2 work on my computer. I run
>> Windows XP. 
>> I tried it both with  R-2.0.0 and R-2.0.1 and downloaded all packages by default
>> using:
>> >source("http://www.bioconductor.org/getBioC.R")
>> >getBioC()
>> Hgu133plus2 was installed as release package by downloading .zip archive and
>> installing from pull down menu: Install from local zip file(s). Also I tried to
>> install hgu133plus2 as development package using:
>> > library(reposTools) 
>> > install.packages2("hgu133plus2", develOK = TRUE)
>> But every time I get following message when type:
>> > hgu133plus2()
>> Error in open.connection(con, "rb") : unable to open connection
>> In addition: Warning message: 
>> cannot open compressed file
>> `C:/PROGRA~1/R/rw2000/library/hgu133plus2/data/hgu133plus2QC.rda' 
>> This error causes problems with annotation of my data. Can you suggest something?
>> Thank you very much. 
>> Sincerely, Vitalina Komashko.
>> 
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>
>-- 
>Kasper Daniel Hansen, Research Assistant
>Department of Biostatistics, University of Copenhagen
>