[BioC] annotation packages and goTools

[Straubhaar, Juerg]

I would like to use goTools with a list of MOE430_2 probesets. It
seems that a MOE430_2 annotation file is necessary for this to work. 

I tried this:

>ontoCompare(namesList,probeType=c("moe430a","moe430b"),  plot=TRUE)
[1] "Starting ontoCompare..."
Error: value for "1419903_at" not found

A MOE430_2 package doesn't exist. As far as I know the MOE430_2
chip probes are the sum of the MOE430A and MOE430B chip probes. Can
the MOE430A and -B annotation packages easily be merged to a MOE430_2
annotation package or is this more complicated?

Juerg Straubhaar
Umass Med