May 2009 Archives by date
Starting: Fri May 1 00:23:03 CEST 2009
Ending: Sun May 31 23:23:13 CEST 2009
Messages: 475
- [BioC] KEGGGraph: some complexed proteins are orphans in graphNEL
Paul Shannon
- [BioC] Bioconductor package to map probe set ids from one chip to another chip
Hervé Pagès
- [BioC] JoVE: New Video Articles on Biomedical Research Techniques
Moshe Pritsker, Editor, JoVE
- [BioC] (no subject)
Kasper Daniel Hansen
- [BioC] KEGGGraph: some complexed proteins are orphans in graphNEL
Jitao David Zhang
- [BioC] (no subject)
Martin Morgan
- [BioC] (no subject)
Richard Pearson
- [BioC] KEGGGraph: some complexed proteins are orphans in graphNEL
Jitao David Zhang
- [BioC] Limma and ANOVA with repeated measures
Sharon
- [BioC] installation of Rgraphviz
ravi
- [BioC] KEGGGraph: some complexed proteins are orphans in graphNEL
Paul Shannon
- [BioC] EBImage installation
Wolfgang Huber
- [BioC] KEGGGraph: some complexed proteins are orphans in graphNEL
Jitao David Zhang
- [BioC] Design matrix about a split plot design in Limma
Hu, Juan
- [BioC] readChp (affxparser) segfaults
Gábor Csárdi
- [BioC] installation of Rgraphviz
Kasper Daniel Hansen
- [BioC] installation of Rgraphviz
Martin Morgan
- [BioC] installation of Rgraphviz
Patrick Aboyoun
- [BioC] installation of Rgraphviz
Kasper Daniel Hansen
- [BioC] multiple ColSideColors-type annotations on a heatmap
Levi Waldron
- [BioC] multiple ColSideColors-type annotations on a heatmap
Sean Davis
- [BioC] multiple ColSideColors-type annotations on a heatmap
James F. Reid
- [BioC] multiple ColSideColors-type annotations on a heatmap
Levi Waldron
- [BioC] readChp (affxparser) segfaults
Kasper Daniel Hansen
- [BioC] RdbiPgSQL problem: SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
Ben Madin
- [BioC] extracting specific columns from a table
dhaarini s
- [BioC] extracting specific columns from a table
ALok
- [BioC] (no subject)
顏厥全
- [BioC] (no subject)
顏厥全
- [BioC] extracting specific columns from a table
Saroj K Mohapatra
- [BioC] Installing hthgu133acdf_2.4.0 Was: Re: (no subject)
Saroj K Mohapatra
- [BioC] (no subject)
Laurent Gautier
- [BioC] P-values returned from siggenes's sam() function
Holger Schwender
- [BioC] installation of Rgraphviz
ravi
- [BioC] installation of Rgraphviz
ravi
- [BioC] extracting specific columns from a table
dhaarini s
- [BioC] zooming in a cluster tree
dhaarini s
- [BioC] zooming in a cluster tree
Thomas Girke
- [BioC] error in runBioHMM() (package snapCGH)
Wolfgang Raffelsberger
- [BioC] Yet another nested design in limma
Paolo Innocenti
- [BioC] mget() error with NA values
James W. MacDonald
- [BioC] demo code for R package
shirley zhang
- [BioC] demo code for R package
Steve Lianoglou
- [BioC] demo code for R package
James F. Reid
- [BioC] demo code for R package
Patrick Aboyoun
- [BioC] P-values returned from siggenes's sam() function
Michal Blazejczyk
- [BioC] KEGG: gene ids for nodes in a pathway
Tim Smith
- [BioC] KEGG: gene ids for nodes in a pathway
Saroj K Mohapatra
- [BioC] P-values returned from siggenes's sam() function
Holger Schwender
- [BioC] KEGG: gene ids for nodes in a pathway
Marc Carlson
- [BioC] how to avoid outliers
John Antonydas Gaspar
- [BioC] Showing two datasets in the same plot
Peder Worning
- [BioC] Showing two datasets in the same plot
Laurent Gautier
- [BioC] KEGG: gene ids for nodes in a pathway
Tim Smith
- [BioC] KEGG: gene ids for nodes in a pathway
James W. MacDonald
- [BioC] KEGGSOAP install problem
Daniel Brewer
- [BioC] KEGG: gene ids for nodes in a pathway
Jitao David Zhang
- [BioC] random positioning of duplicate spots
Vishal Thapar
- [BioC] KEGG: gene ids for nodes in a pathway
Tim Smith
- [BioC] KEGG: gene ids for nodes in a pathway
Sim, Fraser
- [BioC] flowClust results in subset filters
Florian Hahne
- [BioC] flowClust installation on OS X
Noah Zimmerman
- [BioC] Rgraphviz: .onLoad error
Michael Friendly
- [BioC] flowClust installation on OS X
Patrick Aboyoun
- [BioC] Rgraphviz: .onLoad error
Kasper Daniel Hansen
- [BioC] flowClust results in subset filters
Kenneth Lo
- [BioC] random positioning of duplicate spots
Naomi Altman
- [BioC] flowClust results in subset filters
Florian Hahne
- [BioC] flowClust results in subset filters
Kenneth Lo
- [BioC] flowClust installation on OS X
Kenneth Lo
- [BioC] Yet another nested design in limma
Gordon K Smyth
- [BioC] Yet another nested design in limma
Gordon K Smyth
- [BioC] Rgraphviz: .onLoad error
Michael Friendly
- [BioC] Rgraphviz: .onLoad error
Patrick Aboyoun
- [BioC] analyze/import my normalized/summarized affy data in affylmGUI
shirley zhang
- [BioC] random positioning of duplicate spots
Peder Worning
- [BioC] Statistics position at Roche, Basel
Steiner, Guido
- [BioC] GenomeGraphs 1.4.0 fails to plot empty GeneRegion
Tim Rayner
- [BioC] smida won't load in R 2.9
katrien michiels
- [BioC] smida won't load in R 2.9
Sean Davis
- [BioC] smida won't load in R 2.9
Vincent Carey
- [BioC] smida won't load in R 2.9
john seers (IFR)
- [BioC] gcrma and unable to access brainarray.mbni.med.umich.edu...
Loren Engrav
- [BioC] gcrma and unable to access brainarray.mbni.med.umich.edu...
James W. MacDonald
- [BioC] KEGGHyperGParams variable "mouse4302PATH2EG" was not found
John Coulthard
- [BioC] [Fwd: [Fwd: loading SPOT file]]
Barbara Cegielska
- [BioC] 'RG' looks like a pre-2.4.0 S4 object: please recreate it
Barbara Cegielska
- [BioC] 'RG' looks like a pre-2.4.0 S4 object: please recreate it
Vincent Carey
- [BioC] KEGGHyperGParams variable "mouse4302PATH2EG" was not found
Tony Chiang
- [BioC] KEGGHyperGParams variable "mouse4302PATH2EG" was not found
Marc Carlson
- [BioC] KEGGHyperGParams variable "mouse4302PATH2EG" was not found
Marc Carlson
- [BioC] limma - Identifying interactions
Suzanne Szak
- [BioC] filtered Exon Arrays: Core vs Extended Dataset
Lana Schaffer
- [BioC] how often are annotation packages updated (with respect to hgu133a.db and hgu133plus2.db)
Andrew Yee
- [BioC] how often are annotation packages updated (with respect to hgu133a.db and hgu133plus2.db)
Kasper Daniel Hansen
- [BioC] how often are annotation packages updated (with respect to hgu133a.db and hgu133plus2.db)
Andrew Yee
- [BioC] filtered Exon Arrays: Core vs Extended Dataset
Mark Robinson
- [BioC] [Bioc] Is Nimblegen Training worth it?
Thomas Hampton
- [BioC] log 2 conversion of cDNA
santana sarma
- [BioC] Warning in compute.affinities.local()
Naoki Irie
- [BioC] Warning in compute.affinities.local()
Laurent Gautier
- [BioC] Agilent 2 colour spike-in controls
Nathan S. Watson-Haigh
- [BioC] read.targets() in the Agi4x44PreProcess package
Massimo Pinto
- [BioC] Agilent 2 colour spike-in controls
Naomi Altman
- [BioC] read.targets() in the Agi4x44PreProcess package
Pedro Lopez-Romero
- [BioC] read.targets() in the Agi4x44PreProcess package
Massimo Pinto
- [BioC] limma - Identifying interactions
James W. MacDonald
- [BioC] Correlating all pairs of genes in a gene expression matrix?
Dan Bolser
- [BioC] Correlating all pairs of genes in a gene expression matrix?
Thomas Girke
- [BioC] function log2ratios() missing in snapCGH ?
Winfried Hofmann
- [BioC] problem of cMAP package
Youn, Ahrim (NIH/NCI) [F]
- [BioC] problem of cMAP package
Vincent Carey
- [BioC] problem of cMAP package
Robert Gentleman
- [BioC] KEGGgraph: gene ids for nodes in a pathway
Tim Smith
- [BioC] KEGGgraph: gene ids for nodes in a pathway
Tony Chiang
- [BioC] KEGGgraph: gene ids for nodes in a pathway
Jitao David Zhang
- [BioC] limma - Identifying interactions
James W. MacDonald
- [BioC] KEGGgraph: gene ids for nodes in a pathway
Tim Smith
- [BioC] installation of exon.pmcdf and XMAP
chunjiang he
- [BioC] how often are annotation packages updated (with respect to hgu133a.db and hgu133plus2.db)
Marc Carlson
- [BioC] read.targets() in the Agi4x44PreProcess package
Massimo Pinto
- [BioC] Yet another nested design in limma
Paolo Innocenti
- [BioC] increasing memory for R bg job
carol white
- [BioC] Affy paeg1a (pseudomonas) annotation
Thomas Hampton
- [BioC] Affy paeg1a (pseudomonas) annotation
Marc Carlson
- [BioC] Affy paeg1a (pseudomonas) annotation
cstrato
- [BioC] OutlierD package implementation
Ashwin Kumar
- [BioC] About Volcano Plot
Priscila Grynberg
- [BioC] About Volcano Plot
Thomas Hampton
- [BioC] About Volcano Plot
Priscila Grynberg
- [BioC] Upgrading R
Sarmah, Chintanu Kumar
- [BioC] Package Icens_1.16.0.tar.gz has been built for Windows
Uwe.Ligges at r-project.org
- [BioC] Package gpls_1.16.0.tar.gz has been built for Windows
Uwe.Ligges at r-project.org
- [BioC] readChp (affxparser) segfaults
Kasper Daniel Hansen
- [BioC] Upgrading R
Robert Gentleman
- [BioC] limma - Identifying interactions
Michal Kolář
- [BioC] Upgrading R
arnaud Le Cavorzin
- [BioC] GOstat implementation for UHN12K chips
Ashwin Kumar
- [BioC] Upgrading R
john seers (IFR)
- [BioC] Upgrading R
john seers (IFR)
- [BioC] Finding differentially expressed genes using Ebayes
John Herbert
- [BioC] Finding differentially expressed genes using Ebayes
Sean Davis
- [BioC] Ensembl mart release 54: Useful information
Rhoda Kinsella
- [BioC] Upgrading R
Sim, Fraser
- [BioC] Upgrading R
Robert Gentleman
- [BioC] readChp (affxparser) segfaults
Gábor Csárdi
- [BioC] Finding differentially expressed genes using Ebayes
James W. MacDonald
- [BioC] Finding differentially expressed genes using Ebayes
Saroj K Mohapatra
- [BioC] GOstat implementation for UHN12K chips
James W. MacDonald
- [BioC] Upgrading R
Michal Blazejczyk
- [BioC] GO.db redundance
giacomo.tuana at unimib.it
- [BioC] Upgrading R
Steve Lianoglou
- [BioC] KEGGSOAP: problem with get.pathways.by.genes()
Julien Meunier
- [BioC] A question on microarray timeseries data
Anjan Purkayastha
- [BioC] Finding differentially expressed genes using Ebayes
John Herbert
- [BioC] KEGGSOAP: problem with get.pathways.by.genes()
Saroj K Mohapatra
- [BioC] exon.pmcdf and mouseexon.pmcdf
chunjiang he
- [BioC] exon.pmcdf and mouseexon.pmcdf
James W. MacDonald
- [BioC] GO.db redundance
mcarlson at fhcrc.org
- [BioC] exon.pmcdf and mouseexon.pmcdf
Lakshmanan Iyer
- [BioC] Upgrading R
Florian Hahne
- [BioC] limma design, 3 biological reps (two with a tech rep, one without)
Ryan Basom
- [BioC] News-Witness the REAL IMAGE of Quark-Gluon Plasma
ABSOLUTE PROJECT
- [BioC] Upgrading R
Sarmah, Chintanu Kumar
- [BioC] exon.pmcdf and mouseexon.pmcdf
Michal Okoniewski
- [BioC] Packages not getting installed
Ashwin Kumar
- [BioC] Basic Q on dye- swap
Christina Tigress
- [BioC] Upgrading R
Bryan Hepworth
- [BioC] KEGGSOAP: problem with get.pathways.by.genes()
Julien Meunier
- [BioC] Packages not getting installed
anna freni sterrantino
- [BioC] Can BioC still convert exprSet to ExpressionSet?
David Rossell
- [BioC] snapCGH fails in runBioHMM
Ramon Diaz-Uriarte
- [BioC] Bioconductor Digest, Vol 75, Issue 12
Manel, Nicolas
- [BioC] Finding differentially expressed genes using Ebayes
James W. MacDonald
- [BioC] Question about using oligo and SNPchip for copy number analysis
Min-Han Tan
- [BioC] Bioconductor Digest, Vol 75, Issue 12
john seers (IFR)
- [BioC] Packages not getting installed
James W. MacDonald
- [BioC] KEGGSOAP: problem with get.pathways.by.genes()
Saroj K Mohapatra
- [BioC] snapCGH fails in runBioHMM
Wolfgang Raffelsberger
- [BioC] Can BioC still convert exprSet to ExpressionSet?
Martin Morgan
- [BioC] snapCGH fails in runBioHMM
Ramon Diaz-Uriarte
- [BioC] Can BioC still convert exprSet to ExpressionSet?
David Rossell
- [BioC] snapCGH fails in runBioHMM
J-C. Marioni
- [BioC] snapCGH fails in runBioHMM
Ramon Diaz-Uriarte
- [BioC] Problem with hyperGTest using ath1121501.db
Ulrike Goebel
- [BioC] limma and technical rep dye-swaps
Nathan S. Watson-Haigh
- [BioC] Agilent duplicate spots and multiple probes per gene
Nathan S. Watson-Haigh
- [BioC] Can BioC still convert exprSet to ExpressionSet?
Martin Morgan
- [BioC] paired t-test
Yogi Sundaravadanam
- [BioC] Problem with hyperGTest using ath1121501.db
Ulrike Goebel
- [BioC] Agilent duplicate spots and multiple probes per gene
Peder Worning
- [BioC] Problem with hyperGTest using ath1121501.db -- oops - another one !
Ulrike Goebel
- [BioC] changes in GeneAnnot custom CDF annotation packages
Francesco Ferrari
- [BioC] Normalization of arrays where most of the genes change
He, Yiwen (NIH/CIT) [C]
- [BioC] Normalization of arrays where most of the genes change
Sean Davis
- [BioC] paired t-test
James W. MacDonald
- [BioC] Axes in Volcano Plots
Thomas Hampton
- [BioC] intraSpotCorrelation consensus values for Single Channel analysis in limma
Thierry Janssens
- [BioC] intraSpotCorrelation consensus values for Single Channel analysis in limma
Jenny Drnevich
- [BioC] CDF packages
chunjiang he
- [BioC] mislinked task views?
Wacek Kusnierczyk
- [BioC] Normalization of arrays where most of the genes change
He, Yiwen (NIH/CIT) [C]
- [BioC] intraSpotCorrelation consensus values for Single Channel analysis in limma
Thierry Janssens
- [BioC] CDF packages
James W. MacDonald
- [BioC] Problem with hyperGTest using ath1121501.db -- oops - another one !
Marc Carlson
- [BioC] What Turns Him On - A Guuide to Talking Dirty to Your Boyfriend
Brendon Villega
- [BioC] Axes in Volcano Plots
Wolfgang Huber
- [BioC] June R/Splus Courses: Nationwide Back2back (1) R/S+ Fundamentals and (2) R/S-Plus Advanced Programming. in San Francisco, New York City, Boston, Washington DC, Seattle and Salt Lake City
Sue Turner
- [BioC] readFASTA Arguments
Colleen Doherty
- [BioC] readFASTA Arguments
Martin Morgan
- [BioC] Subject: Re: Normalization of arrays where most of the genes change
Alicia Oshlack
- [BioC] http://www.bioconductor.org not online
Wolfgang Huber
- [BioC] Venn Diagram of 4 Sets
Thomas Hampton
- [BioC] problems loading imagene data with limma
Ingunn Berget
- [BioC] http://www.bioconductor.org not online
Jitao David Zhang
- [BioC] Venn Diagram of 4 Sets
Thomas Girke
- [BioC] Venn Diagram of 4 Sets
Steffen Moeller
- [BioC] Error using summary method on GOHyperGResult object
Sim, Fraser
- [BioC] Venn Diagram of 4 Sets
Thomas Hampton
- [BioC] running MBEI (PM-MM) using expresso
Javier Pérez Florido
- [BioC] Venn Diagram of 4 Sets
Thomas Girke
- [BioC] running MBEI (PM-MM) using expresso
James W. MacDonald
- [BioC] microRNA Agilent normalization
Pedro Lopez-Romero
- [BioC] Error using summary method on GOHyperGResult object
Martin Morgan
- [BioC] KLdist function with unequal sample sizes
wrighth
- [BioC] rtracklayer and UCSC
Kasper Daniel Hansen
- [BioC] rtracklayer and UCSC
Sean Davis
- [BioC] rtracklayer and UCSC
Michael Lawrence
- [BioC] rtracklayer and UCSC
Keith Satterley
- [BioC] limma: is layout really necessary for non-printtip normalization?
Michael Lawrence
- [BioC] rtracklayer and UCSC
Michael Lawrence
- [BioC] Cannot install GO & KEGG
Ashwin Kumar
- [BioC] Cannot install GO & KEGG
Robert Gentleman
- [BioC] limma separate channel analysis: extremely low consensus intraspotcorrelation
Thierry Janssens
- [BioC] HilbertVis troubles
Tobias Straub
- [BioC] running MBEI (PM-MM) using expresso
Javier Pérez Florido
- [BioC] HilbertVis troubles
Simon Anders
- [BioC] KLdist function with unequal sample sizes
Wolfgang Huber
- [BioC] xps - number of probesets for HuGene10ST array
Michael Walter
- [BioC] How to download multiple packages
Narendra Kaushik
- [BioC] Further analysis after using MEDME?
Prashantha Hebbar Kiradi [MU-MLSC]
- [BioC] running MBEI (PM-MM) using expresso
James W. MacDonald
- [BioC] How to download multiple packages
Richard Pearson
- [BioC] Lumi: GenomStudio vs BeadStudio
Ingrid H. G. Østensen
- [BioC] On the house bets for an entire day
Platinum Play
- [BioC] GO.db redundance
Marc Carlson
- [BioC] Error from using featureFilter (genefilter package)
ywchen at jimmy.harvard.edu
- [BioC] Error from using featureFilter (genefilter package)
Robert Gentleman
- [BioC] no applicable method for "LD"
Basu, Analabha
- [BioC] Error from using featureFilter (genefilter package)
ywchen at jimmy.harvard.edu
- [BioC] xps - number of probesets for HuGene10ST array
cstrato
- [BioC] Call for participants of CAMDA2009
Pan Du
- [BioC] memory invalid permission with qc()
Simon Noël
- [BioC] query BiomaRt for the coordinates of the coding regions within individual exons?
Paul Shannon
- [BioC] past bioc releases
wangchuanming
- [BioC] past bioc releases
Simon Anders
- [BioC] Further analysis after using MEDME?
mattia pelizzola
- [BioC] "GOstat" package not installing
Ashwin Kumar
- [BioC] past bioc releases
wangchuanming
- [BioC] "GOstat" package not installing
Steve Lianoglou
- [BioC] memory invalid permission with qc()
Wolfgang Huber
- [BioC] Error from using featureFilter (genefilter package)
Wolfgang Huber
- [BioC] Error from using featureFilter (genefilter package)
ywchen at jimmy.harvard.edu
- [BioC] Error from using featureFilter (genefilter package)
Martin Morgan
- [BioC] past bioc releases
Martin Morgan
- [BioC] Affy output
Sarmah, Chintanu Kumar
- [BioC] nsFilter() errors on ExpressionSetIllumina data object
Elliot Kleiman
- [BioC] Affy output
James W. MacDonald
- [BioC] IQR implementation in varFiler and nsFilter (genefilter package)
James F. Reid
- [BioC] Stange message with getOption("device") in OSX
"M. Gonzalo Claros Díaz"
- [BioC] Stange message with getOption("device") in OSX
Vincent Carey
- [BioC] running MBEI (PM-MM) using expresso
Javier Pérez Florido
- [BioC] Stange message with getOption("device") in OSX
"M. Gonzalo Claros Díaz"
- [BioC] problem with reading agilent microarray data into agi4x44preprocess
Jarek Bryk
- [BioC] Stange message with getOption("device") in OSX
Vincent Carey
- [BioC] Stange message with getOption("device") in OSX
Florian Hahne
- [BioC] Problem with duplicateCorrelation in LIMMA
York Lee
- [BioC] RWebServices failing on mkserver (ant) target.
Michael P Shipway
- [BioC] problem with biocLite("Biobase") -- results in looping of download
Mark Kimpel
- [BioC] problems of GenABEL
Ping-Hsun Hsieh
- [BioC] problems of GenABEL
Vincent Carey
- [BioC] RWebServices failing on mkserver (ant) target.
Martin Morgan
- [BioC] problem with biocLite("Biobase") -- results in looping of download
Martin Morgan
- [BioC] mislinked task views?
Vincent Carey
- [BioC] Affy output
Sarmah, Chintanu Kumar
- [BioC] xps - number of probesets for HuGene10ST array
Michael Walter
- [BioC] maSigPro time problem (2.trial)
Klaus-Peter Pleissner
- [BioC] problem with biocLite("Biobase") -- results in looping of download
Cei Abreu-Goodger
- [BioC] mislinked task views?
Wacek Kusnierczyk
- [BioC] Affy output
James W. MacDonald
- [BioC] limma and matrix design for single channel arrays - in search of a primer.
Massimo Pinto
- [BioC] beadarray: outliers but not summary in log2-scale?
Cei Abreu-Goodger
- [BioC] memory invalid permission with qc()
Simon Noël
- [BioC] limma and matrix design for single channel arrays - in search of a primer.
James W. MacDonald
- [BioC] memory invalid permission with qc()
James W. MacDonald
- [BioC] limma and matrix design for single channel arrays - in search of a primer.
Massimo Pinto
- [BioC] PWM matching using matchPWM in Biostrings
Kristoffer Rigbolt
- [BioC] memory invalid permission with qc()
Simon Noël
- [BioC] memory invalid permission with qc()
James W. MacDonald
- [BioC] memory invalid permission with qc()
Simon Noël
- [BioC] RWebServices failing on mkserver (ant) target.
Michael P Shipway
- [BioC] One-color spotted microarrays analysis
Pier-Luc Poulin
- [BioC] memory invalid permission with qc()
Simon Noël
- [BioC] memory invalid permission with qc()
James W. MacDonald
- [BioC] memory invalid permission with qc()
Simon Noël
- [BioC] problem using annotation database with annaffy
Georg Otto
- [BioC] How to plot gene on their chromosome?
Simon Noël
- [BioC] RWebServices failing on mkserver (ant) target.
Michael P Shipway
- [BioC] question about separating color channels for dual-channel cDNA microarray
Wei Xu
- [BioC] xps - number of probesets for HuGene10ST array
cstrato
- [BioC] Problem with duplicateCorrelation in LIMMA
York Lee
- [BioC] One-color spotted microarrays analysis
Massimo Pinto
- [BioC] One-color spotted microarrays analysis
Massimo Pinto
- [BioC] Affy output
Sarmah, Chintanu Kumar
- [BioC] LIMMA contrast matrix for three-way ANOVA with many comparisons
Levi Waldron
- [BioC] PWM matching using matchPWM in Biostrings
Hervé Pagès
- [BioC] PWM matching using matchPWM in Biostrings
Patrick Aboyoun
- [BioC] Basic Q on dye- swap
Mark Cowley
- [BioC] Category: testing for non-random chromosomal distribution of DE genes
Paolo Innocenti
- [BioC] Problem with Hopach: "Error in dmat[ord, ]"
Paolo Innocenti
- [BioC] Important Message Notification
Abbey National Plc
- [BioC] how to merge replicate spots
Barbara Cegielska
- [BioC] how to merge replicate spots
Richard Friedman
- [BioC] FlowViz graphics problems
Anja Schiel
- [BioC] Problem with Hopach: "Error in dmat[ord, ]"
Vincent Carey
- [BioC] Problem with Hopach: "Error in dmat[ord, ]"
Paolo Innocenti
- [BioC] Category: testing for non-random chromosomal distribution of DE genes
Marc Carlson
- [BioC] Nimblegen / Ringo / Preprocess error: inherits(myRG, "RGList") is not TRUE
JEAN-YVES SGRO
- [BioC] problem with biocLite("Biobase") -- results in looping of download
Mark Kimpel
- [BioC] FlowViz graphics problems
Deepayan Sarkar
- [BioC] problem with biocLite("Biobase") -- results in looping of download
Martin Morgan
- [BioC] Problem with duplicateCorrelation in LIMMA
Gordon K Smyth
- [BioC] intraSpotCorrelation
Gordon K Smyth
- [BioC] "GOstat" package not installing
Ashwin Kumar
- [BioC] beadarray: outliers but not summary in log2-scale?
Mark Dunning
- [BioC] beadarray: outliers but not summary in log2-scale?
Cei Abreu-Goodger
- [BioC] "GOstat" package not installing
Steve Lianoglou
- [BioC] Nimblegen / Ringo / Preprocess error: inherits(myRG, "RGList") is not TRUE
Joern Toedling
- [BioC] One-color spotted microarrays analysis
Pier-Luc Poulin
- [BioC] FlowViz graphics problems
Anja Schiel
- [BioC] "GOstat" package not installing
Hervé Pagès
- [BioC] How to plot gene on their chromosome?
Hervé Pagès
- [BioC] no applicable method for "LD"
Hervé Pagès
- [BioC] FlowViz graphics problems
Florian Hahne
- [BioC] Nimblegen / Ringo / Preprocess error: inherits(myRG, "RGList") is not TRUE
JEAN-YVES SGRO
- [BioC] no applicable method for "LD"
Basu, Analabha
- [BioC] One-color spotted microarrays analysis
Mark Cowley
- [BioC] How to plot gene on their chromosome?
Simon Noël
- [BioC] One-color spotted microarrays analysis
Naomi Altman
- [BioC] Microarray experimental designs
Usuario R
- [BioC] AnnotationDbi for organisms not on bioconductor.org
Michael Muratet
- [BioC] Limma analyse factorial data with two-color arrays
Jabez Wilson
- [BioC] Limma analyse factorial data with two-color arrays
Jabez Wilson
- [BioC] maSigPro and EMV no longer available for windows.
Giulio Di Giovanni
- [BioC] One-color spotted microarrays analysis
Pier-Luc Poulin
- [BioC] maSigPro and EMV no longer available for windows.
Giulio Di Giovanni
- [BioC] Limma analyse factorial data with two-color arrays
James W. MacDonald
- [BioC] Limma analyse factorial data with two-color arrays
Jabez Wilson
- [BioC] question using GSEABase
chunjiang he
- [BioC] question using GSEABase
Vincent Carey
- [BioC] question using GSEABase
Martin Morgan
- [BioC] quantile robust and RMA in xps
Mayte Suarez-Farinas
- [BioC] normalizeByReference package for Affymetrix ChIP-chip data
JENNIFER JUDY
- [BioC] question using GSEABase
Martin Morgan
- [BioC] maSigPro and EMV no longer available for windows.
Hervé Pagès
- [BioC] maSigPro and EMV no longer available for windows.
Ana Conesa
- [BioC] Software Demo for Summer Research Grant
RICHARD SEGALL
- [BioC] Limma analyse factorial data with two-color arrays
Naomi Altman
- [BioC] One-color spotted microarrays analysis
Naomi Altman
- [BioC] quantile robust and RMA in xps
cstrato
- [BioC] quantile robust and RMA in xps
Ben Bolstad
- [BioC] quantile robust and RMA in xps
cstrato
- [BioC] How to plot gene on their chromosome?
Simon Noël
- [BioC] Simple beadarraySNP analysis
Dmitri Mouradov
- [BioC] upregulated or downregulated?
biosciencegeek at gmail.com
- [BioC] upregulated or downregulated?
Saroj K Mohapatra
- [BioC] upregulated or downregulated?
Saroj K Mohapatra
- [BioC] upregulated or downregulated?
biosciencegeek at gmail.com
- [BioC] R2.10 and BioC 2.5 where to report bugs?
Paul Leo
- [BioC] R2.10 and BioC 2.5 where to report bugs?
Laurent Gatto
- [BioC] R2.10 and BioC 2.5 where to report bugs?
Paul Leo
- [BioC] GEOquery and parsing SOFT files
Wacek Kusnierczyk
- [BioC] (control vs treatment) in (wildtype vs mutant) microarray analysis
Cheng-Yuan Kao
- [BioC] (control vs treatment) in (wildtype vs mutant) microarray analysis
Thomas Hampton
- [BioC] (control vs treatment) in (wildtype vs mutant) microarray analysis
Saroj K Mohapatra
- [BioC] xps - number of probesets for HuGene10ST array
Michael Walter
- [BioC] quantile robust and RMA in xps
Mayte Suarez-Farinas
- [BioC] Rmaanova with nested design: model construction
Aurélie Bonin
- [BioC] About NormExp+offset=50
Priscila Grynberg
- [BioC] About NormExp+offset=50
Saroj K Mohapatra
- [BioC] GEOquery and parsing SOFT files
Wolfgang Huber
- [BioC] quantile robust and RMA in xps
cstrato
- [BioC] autocorrelation analysis
mattia pelizzola
- [BioC] Error in ebayes: No residual degrees of freedom in linear model fits
Lucas Santana dos Santos
- [BioC] GEOquery and parsing SOFT files
Wacek Kusnierczyk
- [BioC] R2.10 and BioC 2.5 where to report bugs?
Patrick Aboyoun
- [BioC] GEOquery and parsing SOFT files
Sean Davis
- [BioC] GEOquery and parsing SOFT files
Wacek Kusnierczyk
- [BioC] autocorrelation analysis
Zeljko Debeljak
- [BioC] Error in ebayes: No residual degrees of freedom in linear model fits
Naomi Altman
- [BioC] comparing affymetrix and agilent microarray data
Jarek Bryk
- [BioC] GEOquery and parsing SOFT files
Sean Davis
- [BioC] GEOquery and parsing SOFT files
Wacek Kusnierczyk
- [BioC] onechannelGUI error,
PJARES at clinic.ub.es
- [BioC] How can I get the normalized data for each probe before summarizing in oligo package?
Tae-Ho Lee
- [BioC] How can I get the normalized data for each probe before summarizing in oligo package?
Laurent Gautier
- [BioC] function error
Renata Paiva
- [BioC] quantile robust and RMA in xps
Mayte Suarez-Farinas
- [BioC] How to plot gene on their chromosome?
Simon Noël
- [BioC] LIMMA: warning coercing argument of type 'double' to logical
Hooiveld, Guido
- [BioC] quantile robust and RMA in xps
cstrato
- [BioC] Error in ebayes: No residual degrees of freedom in linear model fits
Wolfgang Huber
- [BioC] Error in ebayes: No residual degrees of freedom in linear model fits
Lucas Santana dos Santos
- [BioC] normalizeByReference package for Affymetrix ChIP-chip data
Wolfgang Huber
- [BioC] One-color spotted microarrays analysis
Wolfgang Huber
- [BioC] One-color spotted microarrays analysis
Wolfgang Huber
- [BioC] One-color spotted microarrays analysis
Henrik Bengtsson
- [BioC] Limma analyse factorial data with two-color arrays
Jabez Wilson
- [BioC] help with
Alberto Goldoni
- [BioC] help with dataset
Alberto Goldoni
- [BioC] help with dataset
Martin Morgan
- [BioC] function error
Martin Morgan
- [BioC] help with dataset
Vincent Carey
- [BioC] Limma analyse factorial data with two-color arrays
Naomi Altman
- [BioC] help with dataset
Alberto Goldoni
- [BioC] problem with pdInfoBuilder
Elsa Aguera
- [BioC] help with dataset
Saroj K Mohapatra
- [BioC] help with dataset
Martin Morgan
- [BioC] How to plot gene on their chromosome?
Martin Morgan
- [BioC] onechannelGUI error
rcaloger
- [BioC] function error
anna freni sterrantino
- [BioC] fold-change when no expression to high expression
Matthew McCormack
- [BioC] LIMMA: warning coercing argument of type 'double' to logical
Gordon K Smyth
- [BioC] readBGX - sigma2.1 error
Lucas Santana dos Santos
- [BioC] readBGX - sigma2.1 error
Lucas Santana dos Santos
- [BioC] fold-change when no expression to high expression
Laurent Gautier
- [BioC] You have one new message
Commonwealth Bank of Australia
- [BioC] You have one new message
Commonwealth Bank of Australia
- [BioC] fold-change when no expression to high expression
J.delasHeras at ed.ac.uk
- [BioC] biomaRt - current devel version of biomaRt+RCurl don't work
Wolfgang Huber
- [BioC] quantile robust and RMA in xps
Mayte Suarez-Farinas
- [BioC] quantile robust and RMA in xps
cstrato
- [BioC] Congratulations!
Commonwealth Bank of Australia
- [BioC] Congratulations!
Commonwealth Bank of Australia
- [BioC] biomaRt - current devel version of biomaRt+RCurl don't work
James Bullard
- [BioC] quantile robust and RMA in xps
cstrato
- [BioC] about columm "size" in out of hyperGtest ( Gostat package)
gregory voisin
- [BioC] Installation of a custom cdf hs133phsentrezgcdf
Min-Han Tan
- [BioC] about columm "size" in out of hyperGtest ( Gostat package)
Marc Carlson
- [BioC] Congratulations!
Commonwealth Bank of Australia
- [BioC] Installation of a custom cdf hs133phsentrezgcdf
Saroj K Mohapatra
- [BioC] quantile robust and RMA in xps
Mayte Suarez Farinas
- [BioC] R2.10 and BioC 2.5 where to report bugs?
Hervé Pagès
- [BioC] How to get gene information
Kay Jaja
- [BioC] R2.10 and BioC 2.5 where to report bugs?
Paul Leo
- [BioC] How to get gene information
Saroj K Mohapatra
- [BioC] How to get gene information
Saroj K Mohapatra
- [BioC] past bioc releases
wangchuanming
- [BioC] biomaRt - current devel version of biomaRt+RCurl don't work
Paul Leo
- [BioC] biomaRt - current devel version of biomaRt+RCurl don't work
Tony Chiang
- [BioC] problem with "ls" command
anupam sinha
- [BioC] problem with "ls" command
anna freni sterrantino
- [BioC] quantile robust and RMA in xps
cstrato
- [BioC] biomaRt - current devel version of biomaRt+RCurl don't work
Florian Hahne
- [BioC] Beta score of DNA methylation assays
Adaikalavan Ramasamy
- [BioC] biomaRt - current devel version of biomaRt+RCurl don't work
Patrick Aboyoun
- [BioC] IQR implementation in varFiler and nsFilter (genefilter package)
Patrick Aboyoun
- [BioC] problem updating packages importing the package "MASS"
Mark Kimpel
- [BioC] problem updating packages importing the package "MASS"
Sean Davis
- [BioC] problem updating packages importing the package "MASS"
Sean Davis
- [BioC] problem updating packages importing the package "MASS"
Robert Gentleman
- [BioC] lokalisten: dein registrierungs-code
summer-infinity
- [BioC] fold-change when no expression to high expression
Wolfgang Huber
- [BioC] Beta score of DNA methylation assays
Saroj K Mohapatra
- [BioC] MAS5 to selected average
Dr Balazs Gyorffy
Last message date:
Sun May 31 23:23:13 CEST 2009
Archived on: Sun May 31 23:24:50 CEST 2009
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