[BioC] GEOquery and parsing SOFT files
Wacek Kusnierczyk
Waclaw.Marcin.Kusnierczyk at idi.ntnu.no
Tue May 26 09:21:33 CEST 2009
Sean Davis wrote:
[...]
> Thanks, Wacek, for the report. This is a known issue and GEOquery could
> probably be smarter than it currently is; I have not changed that code in q
> while since GEO began using GSE Matrix files. You could try using
> GSEMatrix=TRUE, as the documentation suggests. You will find that will deal
> with your speed issues.
>
>
thanks. if parsing soft files is no longer essential, it makes little
sense for me to delve into the implementation details; otherwise, i
could try to find a spot for improvement. what's your opinion?
vQ
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