[BioC] Rgraphviz: .onLoad error
Michael Friendly
friendly at yorku.ca
Tue May 5 23:49:20 CEST 2009
[Sysinfo: Win XP, R 2.8.1, graphviz 2.20]
I just tried to install and load Rgraphviz following the instructions at
http://www.bioconductor.org/packages/release/bioc/html/Rgraphviz.html
giving the error in the transcript below when I try to load the package.
I know from previous threads on R-help, e.g.,
http://finzi.psych.upenn.edu/R/Rhelp08/archive/137494.html
that versions of Rgraphviz and graphviz have to be in sync, graphviz
(e.g., dot)
have to be on the path, etc. and I think I've satisfied these, but I get
the same
error (.onLoad failed ...).
Checking the .dll referred to in the message,
unable to load shared library
'C:/R/R-2.8.1/library/Rgraphviz/libs/Rgraphviz.dll':
shows that it is actually there.
What is wrong & how can I correct it?
-Michael
Graphviz version:
[HEALTH] C:\>dot -V
dot - Graphviz version 2.20.2 (Wed Jul 9 19:59:08 GMT 2008)
> source("http://bioconductor.org/biocLite.R")
> biocLite("Rgraphviz")
Running biocinstall version 2.3.13 with R version 2.8.1
Your version of R requires version 2.3 of Bioconductor.
trying URL
'http://bioconductor.org/packages/2.3/bioc/bin/windows/contrib/2.8/Rgraphviz_1.20.4.zip'
Content type 'application/zip' length 1008719 bytes (985 Kb)
opened URL
downloaded 985 Kb
package 'Rgraphviz' successfully unpacked and MD5 sums checked
The downloaded packages are in
C:\Documents and Settings\default\Local
Settings\Temp\Rtmp5a3NNx\downloaded_packages
updating HTML package descriptions
> library(Rgraphviz)
Loading required package: graph
Error in inDL(x, as.logical(local), as.logical(now), ...) :
unable to load shared library
'C:/R/R-2.8.1/library/Rgraphviz/libs/Rgraphviz.dll':
LoadLibrary failure: The specified module could not be found.
Error : .onLoad failed in 'loadNamespace' for 'Rgraphviz'
Error: package/namespace load failed for 'Rgraphviz'
> sessionInfo()
R version 2.8.1 (2008-12-22)
i386-pc-mingw32
locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
[1] grid stats graphics grDevices utils datasets
methods base
other attached packages:
[1] graph_1.20.0 sem_0.9-16 rgl_0.84 psych_1.0-67
lattice_0.17-22
[6] heplots_0.8-7 car_1.2-14
loaded via a namespace (and not attached):
[1] cluster_1.11.13 tools_2.8.1
--
Michael Friendly Email: friendly AT yorku DOT ca
Professor, Psychology Dept.
York University Voice: 416 736-5115 x66249 Fax: 416 736-5814
4700 Keele Street http://www.math.yorku.ca/SCS/friendly.html
Toronto, ONT M3J 1P3 CANADA
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