[BioC] HilbertVis troubles
Tobias Straub
tstraub at med.uni-muenchen.de
Fri May 15 09:53:41 CEST 2009
hi
i want to visualize my tiling array data with HilbertVis and failed
using the hilbertImage function.
I get a proper plot using plotLongVector but when i call the
hilbertImage function i get "Error: length(vec) >= newLength is not
TRUE".
all operations on random data work. so what is wrong with mine?
> summary(data)
Min. 1st Qu. Median Mean 3rd Qu. Max.
-1.48800 -0.18810 0.08333 0.48070 1.00400 3.80400
> mode(data)
[1] "numeric"
> plotLongVector(data)
> hMat <- hilbertImage(data)
Error: length(vec) >= newLength is not TRUE
> sessionInfo()
R version 2.9.0 (2009-04-17)
x86_64-apple-darwin9.6.0
locale:
en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] splines grid stats graphics grDevices utils
datasets methods base
other attached packages:
[1] simpleTile_0.1.39 RColorBrewer_1.0-2 tileHMM_1.0-2
preprocessCore_1.6.0
[5] affy_1.22.0 locfdr_1.1-6 st_1.1.3
sda_1.1.0
[9] fdrtool_1.2.5 corpcor_1.5.2 entropy_1.1.3
vsn_3.12.0
[13] geneplotter_1.22.0 annotate_1.22.0 AnnotationDbi_1.6.0
Biobase_2.4.1
[17] gplots_2.7.1 caTools_1.9 bitops_1.0-4.1
gdata_2.4.2
[21] gtools_2.6.1 HilbertVis_1.2.0 lattice_0.17-22
loaded via a namespace (and not attached):
[1] affyio_1.12.0 DBI_0.2-4 limma_2.18.0 RSQLite_0.7-1
tools_2.9.0 xtable_1.5-5
>
----------------------------------------------------------------------
Tobias Straub ++4989218075439 Adolf-Butenandt-Institute, München D
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