[BioC] running MBEI (PM-MM) using expresso
Javier Pérez Florido
jpflorido at gmail.com
Thu May 14 20:28:15 CEST 2009
Hi all,
The MBEI method has two versions: PM-only and PM-MM.
PM-only model performs no background correction, Invariant Set for
normalization, PM only for PM correction and the Multiplicative Model
for summarization. Using expresso:
eset<-expresso(affyBatch,bgcorrect.method="none",normalize.method="invariantset",
pmcorrect.method="pmonly",summary.method="liwong")
But, what is the expresso command for the PM-MM model?
Thanks in advance,
Javier
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