[BioC] running MBEI (PM-MM) using expresso

Javier Pérez Florido jpflorido at gmail.com
Thu May 14 20:28:15 CEST 2009


Hi all,

The MBEI method has two versions: PM-only and PM-MM.
PM-only model performs no background correction, Invariant Set for 
normalization, PM only for PM correction and the Multiplicative Model 
for summarization. Using expresso:
eset<-expresso(affyBatch,bgcorrect.method="none",normalize.method="invariantset", 
pmcorrect.method="pmonly",summary.method="liwong")

But, what is the expresso command for the PM-MM model?

Thanks in advance,
Javier



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