[BioC] How to download multiple packages
Narendra Kaushik
kaushiknk at Cardiff.ac.uk
Fri May 15 14:29:25 CEST 2009
I have just dowloaded Bioconductor 2.4, but I am not able to download multiple packages in one go although I can downlaod packages one by one.
> biocLite()
Running biocinstall version 2.4.10 with R version 2.9.0
Your version of R requires version 2.4 of Bioconductor.
Will install the following packages:
[1] "affy" "affydata" "affyPLM" "annaffy" "annotate" "Biobase" "biomaRt"
[8] "Biostrings" "DynDoc" "gcrma" "genefilter" "geneplotter" "hgu95av2.db" "limma"
[15] "marray" "multtest" "vsn" "xtable" "affyQCReport"
Please wait...
All downloaded, then when I try to download, I get error -
> biocLite(C("logicFS","logitT","LPE","LPEadj","maanova","macat","maCorrPlot","maDB"))
Running biocinstall version 2.4.10 with R version 2.9.0
Your version of R requires version 2.4 of Bioconductor.
Error in C("logicFS", "logitT", "LPE", "LPEadj", "maanova", "macat", "maCorrPlot", :
object not interpretable as a factor
> sessionInfo()
R version 2.9.0 (2009-04-17)
i386-pc-mingw32
locale:
LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United Kingdom.1252;LC_MONETARY=English_United Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_2.9.0
Thanks in advance
Narendra
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