[BioC] How to download multiple packages

[Richard Pearson]

Narendra

I think you need a lower case "c"

Regards

Richard


Narendra Kaushik wrote:
> I have just dowloaded Bioconductor 2.4, but I am not able to download multiple packages in one go although I can downlaod packages one by one.
> 
>> biocLite()
> Running biocinstall version 2.4.10 with R version 2.9.0 
> Your version of R requires version 2.4 of Bioconductor.
> Will install the following packages:
>  [1] "affy"         "affydata"     "affyPLM"      "annaffy"      "annotate"     "Biobase"      "biomaRt"     
>  [8] "Biostrings"   "DynDoc"       "gcrma"        "genefilter"   "geneplotter"  "hgu95av2.db"  "limma"       
> [15] "marray"       "multtest"     "vsn"          "xtable"       "affyQCReport"
> Please wait...
> 
> All downloaded, then when I try to download, I get error - 
> 
>> biocLite(C("logicFS","logitT","LPE","LPEadj","maanova","macat","maCorrPlot","maDB"))
> Running biocinstall version 2.4.10 with R version 2.9.0 
> Your version of R requires version 2.4 of Bioconductor.
> Error in C("logicFS", "logitT", "LPE", "LPEadj", "maanova", "macat", "maCorrPlot",  : 
>   object not interpretable as a factor
>> sessionInfo()
> R version 2.9.0 (2009-04-17) 
> i386-pc-mingw32 
> 
> locale:
> LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United Kingdom.1252;LC_MONETARY=English_United Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252
> 
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base     
> 
> loaded via a namespace (and not attached):
> [1] tools_2.9.0 
> 
> Thanks in advance 
> 
> Narendra 
> 
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-- 
Richard D Pearson                          richard.pearson at well.ox.ac.uk
Wellcome Trust Centre for Human Genetics   http://www.well.ox.ac.uk/~rpearson
University of Oxford                       Tel: +44 (0)1865 287575
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