[BioC] Installation of a custom cdf hs133phsentrezgcdf

[Saroj K Mohapatra]

Hi Min-Han:
> I have downloaded the CDF hs133phsentrezgcdf version 10, tar xvf done,
> and moved the directory to
> /home/minhan/R/x86_64-unknown-linux-gnu-library/2.9
>
>   
Is that enough? I thought you need 'makecdfenv' to create a package (or 
an environment) from the CDF file.

http://www.bioconductor.org/packages/release/bioc/html/makecdfenv.html
----
This package has two functions. One reads a Affymetrix chip description 
file (CDF) and creates a hash table environment containing the 
location/probe set membership mapping. The other creates a package that 
automatically loads that environment.
----

But then I am not sure in this particular case.

Saroj

> However, I get this error.
>   
>> library(hs133phsentrezgcdf)
>>     
> Error in library(hs133phsentrezgcdf) :
>   'hs133phsentrezgcdf' is not a valid installed package
>
> Ideally, I would like to do
>   source("http://bioconductor.org/biocLite.R")
>     biocLite("hs133phsentrezgcdf") as was possible in past versions
> but package hs133phsentrezgcdf is not available in this version, I think.
>
> Your help is much appreciated! Apologies for this question!
>
> Min-Han
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
>
>