[BioC] gcrma and unable to access brainarray.mbni.med.umich.edu...
Loren Engrav
engrav at u.washington.edu
Wed May 6 17:01:38 CEST 2009
When I run gcrma I get
> AB_gcrmaNumhom2 <- gcrma(AA_ReadAffyNumhom, fast = FALSE)
Warning: unable to access index for repository
http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.9
Warning: unable to access index for repository
http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard/contrib/2.9
trying URL
'http://bioconductor.org/packages/2.4/data/annotation/bin/macosx/leopard/con
trib/2.9/porcinecdf_2.4.0.tgz'
Content type 'application/x-gzip' length 1879945 bytes (1.8 Mb)
opened URL
==================================================
downloaded 1.8 Mb
If I try to go to
<http://brainarray.mbni.med.umich.edu/bioc/bin/macosx/leopard>
Safari say "page cannot be found"
Ignore this? Or do I now have a problem?
=======================================
> sessionInfo()
R version 2.9.0 (2009-04-17)
x86_64-apple-darwin9.6.0
locale:
en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] porcineprobe_2.4.0 AnnotationDbi_1.6.0 porcinecdf_2.4.0 gcrma_2.16.0
Biostrings_2.12.1 IRanges_1.2.0
[7] affy_1.22.0 Biobase_2.4.1
loaded via a namespace (and not attached):
[1] affyio_1.12.0 DBI_0.2-4 preprocessCore_1.6.0
RSQLite_0.7-1 splines_2.9.0
[6] tools_2.9.0
===================
Thank you
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